URMC / Labs / Baran Lab / Publications

Publications

1. Khaledyan D
2. Marini TJ
3. O'Connell A
4. Meng S
5. Kan J
6. Brennan G
7. Zhao Y
8. Baran TM
9. Parker KJ
WATUNet: a deep neural network for segmentation of volumetric sweep imaging ultrasound.; Machine learning: science and technology; Vol 5(1), pp. 015042. 2024 Mar 08.
1. Baran TM
2. Bass DA
3. Christensen L
4. Longbine E
5. Favella MD
6. Foster TH
7. Sharma AK
Safety and Feasibility of Photodynamic Therapy for Percutaneous Image-guided Abdominopelvic Abscess Drainage: Phase 1 Trial.; Radiology; Vol 310(3), pp. e232667. 2024 Mar.
1. Hannan MN
2. Baran TM
Application of transfer learning for rapid calibration of spatially resolved diffuse reflectance probes for extraction of tissue optical properties.; Journal of biomedical optics; Vol 29(2), pp. 027004. 2024 Feb 28.
1. Hannan MN
2. Sharma AK
3. Baran TM
First in human measurements of abscess cavity optical properties and methylene blue uptake prior to photodynamic therapy by in vivo diffuse reflectance spectroscopy.; Journal of biomedical optics; Vol 29(2), pp. 027002. 2024 Feb 27.
1. Li Z
2. Hannan MN
3. Sharma AK
4. Baran TM
Treatment planning for photodynamic therapy of abscess cavities using patient-specific optical properties measured prior to illumination.; Physics in medicine and biology. 2024 Feb 05.
1. Baran TM
2. Sharma AK
Photodynamic Therapy of an Abdominal Abscess at the Time of Percutaneous Drainage.; Cardiovascular and interventional radiology. 2023 Jul 18.
1. Toscano M
2. Marini T
3. Lennon C
4. Erlick M
5. Silva H
6. Crofton K
7. Serratelli W
8. Rana N
9. Dozier AM
10. Castaneda B
11. Baran TM
12. Drennan K
Diagnosis of Pregnancy Complications Using Blind Ultrasound Sweeps Performed by Individuals Without Prior Formal Ultrasound Training.; Obstetrics and gynecology; Vol 141(5), pp. 937-948. 2023 Apr 05.
1. Marini TJ
2. Castaneda B
3. Satheesh M
4. Zhao YT
5. Reátegui-Rivera CM
6. Sifuentes W
7. Baran TM
8. Kaproth-Joslin KA
9. Ambrosini R
10. Rios-Mayhua G
11. Dozier AM
Sustainable volume sweep imaging lung teleultrasound in Peru: Public health perspectives from a new frontier in expanding access to imaging.; Frontiers in health services; Vol 3, pp. 1002208. 2023 Apr 03.
1. Chan H
2. Pavelka MS
3. Baran TM
Methylene blue photodynamic therapy of bacterial species found in human abscesses: Planktonic, biofilm, and 3D silicone models.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 12358. 2023 Mar 14.
1. Hannan MN
2. Sharma AK
3. Baran TM
Preliminary measurements of optical properties in human abscess cavities prior to methylene blue photodynamic therapy.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 12359. 2023 Mar 14.
1. Baran TM
2. Bass DA
3. Christensen L
4. Longbine E
5. Favella MD
6. Foster TH
7. Sharma AK
Photodynamic therapy is a safe and feasible adjunct to percutaneous drainage of deep tissue abscesses: Results of a first in humans Phase 1 clinical trial.; medRxiv : the preprint server for health sciences. 2023 Jan 16.
1. Hannan MN
2. Sharma AK
3. Baran TM
First in human measurements of abscess cavity optical properties and methylene blue uptake prior to photodynamic therapy by in vivo diffuse reflectance spectroscopy.; medRxiv : the preprint server for health sciences. 2023 Jan 16.
1. Bischer AP
2. Baran TM
3. Wojtovich AP
Reactive oxygen species drive foraging decisions in Caenorhabditis elegans.; Redox biology; Vol 67, pp. 102934. 2023 Jan 13.
1. Loftus JR
2. Kadom N
3. Baran TM
4. Hans K
5. Waldman D
6. Wandtke B
Impact of Early Direct Patient Notification on Follow-Up Completion for Non-Urgent Actionable Incidental Radiology Findings.; Journal of the American College of Radiology : JACR. 2023 Jan 09.
1. Li Z
2. Hannan MN
3. Sharma AK
4. Baran TM
Treatment planning for photodynamic therapy of abscess cavities using patient-specific optical properties measured prior to illumination.; medRxiv : the preprint server for health sciences. 2023 Jan 06.
1. Hannan MN
2. Baran TM
Application of Transfer Learning for Rapid Calibration of Spatially-resolved Diffuse Reflectance Probes for Extraction of Tissue Optical Properties.; bioRxiv : the preprint server for biology. 2023 Jan 05.
1. Marini TJ
2. Castaneda B
3. Iyer R
4. Baran TM
5. Nemer O
6. Dozier AM
7. Parker KJ
8. Zhao Y
9. Serratelli W
10. Matos G
11. Ali S
12. Ghobryal B
13. Visca A
14. O'Connell A
Breast Ultrasound Volume Sweep Imaging: A New Horizon in Expanding Imaging Access for Breast Cancer Detection.; Journal of ultrasound in medicine : official journal of the American Institute of Ultrasound in Medicine. 2022 Jul 08.
1. Jha P
2. Gupta A
3. Baran TM
4. Maturen KE
5. Patel-Lippmann K
6. Zafar HM
7. Kamaya A
8. Antil N
9. Barroilhet L
10. Sadowski EA
Diagnostic Performance of the Ovarian-Adnexal Reporting and Data System (O-RADS) Ultrasound Risk Score in Women in the United States.; JAMA network open; Vol 5(6). 2022 Jun 01.
1. Roccabruna JR
2. Bridger KG
3. Baran TM
Fluorescence and diffuse reflectance provide similar accuracy in recovering fluorophore concentration at short source-detector separations.; Journal of modern optics; Vol 69(12), pp. 699-704. 2022 May 11.
1. Gupta A
2. Jha P
3. Baran TM
4. Maturen KE
5. Patel-Lippmann K
6. Zafar HM
7. Kamaya A
8. Antil N
9. Barroilhet L
10. Sadowski E
Ovarian Cancer Detection in Average-Risk Women: Classic- versus Nonclassic-appearing Adnexal Lesions at US.; Radiology. 2022 Mar 22.
1. Li Z
2. Nguyen L
3. Bass DA
4. Baran TM
Effects of patient-specific treatment planning on eligibility for photodynamic therapy of deep tissue abscess cavities: retrospective Monte Carlo simulation study.; Journal of biomedical optics; Vol 27(8). 2022 Feb.
1. Marini TJ
2. Castaneda B
3. Parker K
4. Baran TM
5. Romero S
6. Iyer R
7. Zhao YT
8. Hah Z
9. Park MH
10. Brennan G
11. Kan J
12. Meng S
13. Dozier A
14. O'Connell A
No sonographer, no radiologist: Assessing accuracy of artificial intelligence on breast ultrasound volume sweep imaging scans.; PLOS digital health; Vol 1(11), pp. e0000148. 2022 Jan 23.
1. Bothwell KD
2. Ling FS
3. Ambrosini R
4. Baran TM
5. Lorca MC
6. Chaturvedi A
Standardized Criteria for Identification of Cardiac Tamponade on Non-Electrocardiogram-gated Computed Tomography: Correlation With Echocardiographic Findings.; Journal of thoracic imaging. 2022 Jan 13.
1. Marini TJ
2. Kaproth-Joslin K
3. Ambrosini R
4. Baran TM
5. Dozier AM
6. Zhao YT
7. Satheesh M
8. Mahony Reátegui-Rivera C
9. Sifuentes W
10. Rios-Mayhua G
11. Castaneda B
Volume sweep imaging lung teleultrasound for detection of COVID-19 in Peru: a multicentre pilot study.; BMJ open; Vol 12(10), pp. e061332. 2022 Jan 03.
1. Arroyo J
2. Marini TJ
3. Saavedra AC
4. Toscano M
5. Baran TM
6. Drennan K
7. Dozier A
8. Zhao YT
9. Egoavil M
10. Tamayo L
11. Ramos B
12. Castaneda B
No sonographer, no radiologist: New system for automatic prenatal detection of fetal biometry, fetal presentation, and placental location.; PloS one; Vol 17(2). 2022.
1. Bridger KG
2. Roccabruna JR
3. Baran TM
Optical property recovery with spatially-resolved diffuse reflectance at short source-detector separations using a compact fiber-optic probe.; Biomedical optics express; Vol 12(12). 2021 Dec 01.
1. Baran TM
2. Lin FV
3. Geha P
Functional brain mapping in patients with chronic back pain shows age-related differences.; Pain. 2021 Nov 15.
1. Marini TJ
2. Weis JM
3. Baran TM
4. Kan J
5. Meng S
6. Yeo A
7. Zhao YT
8. Ambrosini R
9. Cleary S
10. Rubens D
11. Chess M
12. Castaneda B
13. Dozier A
14. O'Connor T
15. Garra B
16. Kaproth-Joslin K
Lung ultrasound volume sweep imaging for respiratory illness: a new horizon in expanding imaging access.; BMJ open respiratory research; Vol 8(1). 2021 Nov.
1. Kapoor SR
2. Maldow DJ
3. Baran TM
4. Sharma AK
Rethinking Time-to-Exchange: Outcomes of Nephrostomy Tube Placement in Pregnancy.; Journal of vascular and interventional radiology : JVIR; Vol 32(8). 2021 Aug.
1. Marini TJ
2. Weiss SL
3. Gupta A
4. Zhao YT
5. Baran TM
6. Garra B
7. Shafiq I
8. Oppenheimer DC
9. Egoavil MS
10. Ortega RL
11. Quinn RA
12. Kan J
13. Dozier AM
14. Tamayo L
15. Carlotto C
16. Castaneda B
Testing telediagnostic thyroid ultrasound in Peru: a new horizon in expanding access to imaging in rural and underserved areas.; Journal of endocrinological investigation. 2021 May 10.
1. Chen Q
2. Baran TM
3. Turnbull A
4. Zhang Z
5. Rebok GW
6. Lin FV
Increased segregation of structural brain networks underpins enhanced broad cognitive abilities of cognitive training.; Human brain mapping. 2021 May 06.
1. Toscano M
2. Marini TJ
3. Drennan K
4. Baran TM
5. Kan J
6. Garra B
7. Dozier AM
8. Ortega RL
9. Quinn RA
10. Zhao YT
11. Egoavil MS
12. Tamayo L
13. Carlotto C
14. Castaneda B
Testing telediagnostic obstetric ultrasound in Peru: a new horizon in expanding access to prenatal ultrasound.; BMC pregnancy and childbirth; Vol 21(1). 2021 Apr 26.
1. Kukla B
2. Anthony M
3. Chen S
4. Turnbull A
5. Baran TM
6. Lin FV
Brain Small-Worldness Properties and Perceived Fatigue in Mild Cognitive Impairment.; The journals of gerontology. Series A, Biological sciences and medical sciences. 2021 Mar 18.
1. Chaturvedi A
2. Baran TM
3. Ambrosini R
4. Krishnamoorthy V
Improving CT assessment for pulmonary hypertension in patients with severe aortic stenosis, correlation with right heart catheterization.; Clinical imaging; Vol 77. 2021 Feb 03.
1. Snell SB
2. Gill AL
3. Haidaris CG
4. Foster TH
5. Baran TM
6. Gill SR
Staphylococcus aureus Tolerance and Genomic Response to Photodynamic Inactivation.; mSphere; Vol 6(1). 2021 Jan 06.
1. Marini TJ
2. Oppenheimer DC
3. Baran TM
4. Rubens DJ
5. Dozier A
6. Garra B
7. Egoavil MS
8. Quinn RA
9. Kan J
10. Ortega RL
11. Zhao YT
12. Tamayo L
13. Carlotto C
14. Castaneda B
Testing telediagnostic right upper quadrant abdominal ultrasound in Peru: A new horizon in expanding access to imaging in rural and underserved areas.; PloS one; Vol 16(8). 2021.
1. Bridger KG
2. Roccabruna JR
3. Baran TM
Optical property recovery with spatially-resolved diffuse reflectance at short source-detector separations using a compact fiber-optic probe; Biomedical Optics Express; Vol 12, pp. 7388-7404. 2021 Jan 01.
1. Chen Q
2. Turnbull A
3. Baran TM
4. Lin FV
Longitudinal stability of medial temporal lobe connectivity is associated with tau-related memory decline.; eLife; Vol 9. 2020 Dec 31.
1. Chen Q
2. Baran TM
3. Rooks B
4. O'Banion MK
5. Mapstone M
6. Zhang Z
7. Lin F
Cognitively supernormal older adults maintain a unique structural connectome that is resistant to Alzheimer's pathology.; NeuroImage. Clinical; Vol 28. 2020 Sep 08.
1. Marini TJ
2. Oppenheimer DC
3. Baran TM
4. Rubens DJ
5. Toscano M
6. Drennan K
7. Garra B
8. Miele FR
9. Garra G
10. Noone SJ
11. Tamayo L
12. Carlotto C
13. Trujillo L
14. Waks E
15. Garra K
16. Egoavil MS
17. Berrospi J
18. Castaneda B
New Ultrasound Telediagnostic System for Low-Resource Areas: Pilot Results From Peru.; Journal of ultrasound in medicine : official journal of the American Institute of Ultrasound in Medicine. 2020 Aug 14.
1. Onukwufor JO
2. Trewin AJ
3. Baran TM
4. Almast A
5. Foster TH
6. Wojtovich AP
Quantification of reactive oxygen species production by the red fluorescent proteins KillerRed, SuperNova and mCherry.; Free radical biology & medicine; Vol 147. 2019 Dec 10.
1. Anderson AJ
2. Ren P
3. Baran TM
4. Zhang Z
5. Lin F
Insula and putamen centered functional connectivity networks reflect healthy agers' subjective experience of cognitive fatigue in multiple tasks.; Cortex; a journal devoted to the study of the nervous system and behavior; Vol 119. 2019 Oct.
1. Nuffer Z
2. Baran TM
3. Krishnamoorthy V
4. Kaproth-Joslin K
5. Chaturvedi A
Accuracy of Non-Electrocardiographically Gated Thoracic CT Angiography for Right Atrial and Right Ventricular Enlargement.; Radiology. Cardiothoracic imaging; Vol 1(4). 2019 Oct.
1. Baran TM
2. Zhang Z
3. Anderson AJ
4. McDermott K
5. Lin F
Brain structural connectomes indicate shared neural circuitry involved in subjective experience of cognitive and physical fatigue in older adults.; Brain imaging and behavior. 2019 Sep 06.
1. Baran TM
2. Choi HW
3. Flakus MJ
4. Sharma AK
Photodynamic therapy of deep tissue abscess cavities: Retrospective image-based feasibility study using Monte Carlo simulation.; Medical physics; Vol 46(7). 2019 Jul.
1. Ren P
2. Anderson AJ
3. McDermott K
4. Baran TM
5. Lin F
Cognitive fatigue and cortical-striatal network in old age.; Aging; Vol 11(8). 2019 Apr 17.
1. Baran TM
2. Lin FV
Amyloid and FDG PET of Successful Cognitive Aging: Global and Cingulate-Specific Differences.; Journal of Alzheimer's disease : JAD. 2018 Sep 27.
1. Gupta A
2. Pandya V
3. Baran T
4. Dogra VS
Risk of Pulmonary Embolism in Patients With Isolated Great Saphenous Vein Thrombus.; Ultrasound quarterly; Vol 34(3). 2018 Sep.
1. Baran TM
Photofrin® photodynamic therapy with intratumor photosensitizer injection provides similar tumor response while reducing systemic skin photosensitivity: Pilot murine study; Lasers in Surgery and Medicine; Vol 50(5), pp. 476-482. 2018 Jan 01.
1. Barnett ME
2. Baran TM
3. Foster TH
4. Wojtovich AP
Quantification of light-induced miniSOG superoxide production using the selective marker, 2-hydroxyethidium.; Free radical biology & medicine; Vol 116. 2018 Jan 17.