URMC /
Labs /
Gill Lab /
Publications
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- Hendesi H
- Villani DA
- Prawitt J
- Gill AL
- Abdo Z
- Santangelo KS
- Pezzanite L
- Gill SR
- Zuscik MJ
Gut and Joint Microbiomes: Implications in Osteoarthritis.; Rheumatic diseases clinics of North America; Vol 51(2), pp. 295-324. 2025 Mar 06.
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- Woortman MA
- Barrett ES
- O'Connor TG
- Gill SR
- Scheible K
- Brunner J
- Sun H
- Dominguez-Bello MG
Feeding Expressed Breast Milk Alters the Microbial Network of Breast Milk and Increases Breast Milk Microbiome Diversity over Time.; Microorganisms; Vol 13(1). 2024 Dec 25.
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- Kopycka-Kedzierawski DT
- Ragusa PG
- Feng C
- Flint K
- Watson GE
- Wong CL
- Gill SR
- Billings RJ
- O'Connor TG
Psychosocial determinants of oral health outcomes in young children.; Frontiers in pediatrics; Vol 12, pp. 1478302. 2024 Dec 06.
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- Kenney HM
- Yoshida T
- Berdyshev E
- Calatroni A
- Gill SR
- Simpson EL
- Lussier S
- Boguniewicz M
- Hata T
- Chiesa Fuxench ZC
- De Benedetto A
- Ong PY
- Ko J
- Davidson W
- David G
- Schlievert PM
- Leung DYM
- Beck LA
CERS1 is a Biomarker of Staphylococcus aureus Abundance and Atopic Dermatitis Severity.; The Journal of allergy and clinical immunology. 2024 Sep 27.
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- Scheible K
- Beblavy R
- Sohn MB
- Qui X
- Gill AL
- Narvaez-Miranda J
- Brunner J
- Miller RK
- Barrett ES
- O'Connor TG
- Gill SR
Affective symptoms in pregnancy are associated with the vaginal microbiome.; Journal of affective disorders. 2024 Sep 16.
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- Sohn MB
- Monaco C
- Gill SR
An optimal normalization method for high sparse compositional microbiome data.; PLoS computational biology; Vol 20(8), pp. e1012338. 2024 Aug 05.
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- Quinones Tavarez Z
- Croft DP
- Li D
- Gill SR
- Wojtovich AP
- Rahman I
- Ossip DJ
Fruit flavors in electronic cigarettes (ECIGs) are associated with nocturnal dry cough: A population longitudinal analysis.; PloS one; Vol 19(6), pp. e0306467. 2024 Jun 28.
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- Scheible K
- Beblavy R
- Sohn MB
- Qui X
- Gill AL
- Narvaez-Miranda J
- Brunner J
- Miller RK
- Barrett ES
- O'Connor TG
- Gill SR
Affective Symptoms in Pregnancy are Associated with the Vaginal Microbiome.; bioRxiv : the preprint server for biology. 2024 Apr 12.
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- Kopycka-Kedzierawski DT
- Feng C
- Billings RJ
- Watson GE
- Ragusa PG
- Flint K
- Wong CL
- Gill SR
- Manning S
- O'Connor TG
Psychosocial Risk Exposure Limits Routine Pediatric Oral Health Care.; AJPM focus; Vol 3(2), pp. 100191. 2024 Jan 20.
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- Stolarczyk A
- Perez-Nazario N
- Knowlden SA
- Chinchilli E
- Grier A
- Paller A
- Gill SR
- De Benedetto A
- Yoshida T
- Beck LA
Bleach baths enhance skin barrier, reduce itch but do not normalize skin dysbiosis in atopic dermatitis.; Archives of dermatological research. 2023 Sep 27.
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- Gill SR
- O'Connor TG
- Kopycka-Kedzierawski DT
Early childhood caries prevention through a developmental origins model of the oral microbiome, host and oral environment, and sociodemographic influences.; Quintessence international (Berlin, Germany : 1985); Vol 54(8), pp. 610-611. 2023 Sep 19.
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- Gilbert Klaczko C
- Alkhars N
- Zeng Y
- Klaczko ME
- Gill AL
- Kopycka-Kedzierawski DT
- Jusko TA
- Sohn MB
- Xiao J
- Gill SR
The Oral Microbiome and Cross-Kingdom Interactions during Pregnancy.; Journal of dental research. 2023 Jul 11.
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- Simpson EL
- Schlievert PM
- Yoshida T
- Lussier S
- Boguniewicz M
- Hata T
- Fuxench Z
- De Benedetto A
- Ong PY
- Ko J
- Calatroni A
- Rudman Spergel AK
- Plaut M
- Quataert SA
- Kilgore SH
- Peterson L
- Gill AL
- David G
- Mosmann T
- Gill SR
- Leung DYM
- Beck LA
Rapid Reduction in Staphylococcus aureus in Atopic Dermatitis Subjects Following Dupilumab Treatment.; The Journal of allergy and clinical immunology. 2023 Jun 12.
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- Schwarz EM
- Archer NK
- Atkins GJ
- Bentley KLM
- Botros M
- Cassat JE
- Chisari E
- Coraça-Huber DC
- Daiss JL
- Gill SR
- Goodman SB
- Harro J
- Hernandez CJ
- Ivashkiv LB
- Kates SL
- Marques CNH
- Masters EA
- Muthukrishnan G
- Owen JR
- Raafat D
- Saito M
- Veis DJ
- Xie C
The 2023 Orthopaedic Research Society's International Consensus Meeting on musculoskeletal infection: Summary from the host immunity section.; Journal of orthopaedic research : official publication of the Orthopaedic Research Society. 2023 Jan 16.
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- Bui TI
- Britt EA
- Muthukrishnan G
- Gill SR
Probiotic induced synthesis of microbiota polyamine as a nutraceutical for metabolic syndrome and obesity-related type 2 diabetes.; Frontiers in endocrinology; Vol 13, pp. 1094258. 2023 Jan 13.
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- Xie C
- Ren Y
- Weeks J
- Rainbolt J
- Mark Kenney H
- Xue T
- Allen F
- Shu Y
- Tay AJH
- Lekkala S
- Yeh SA
- Muthukrishnan G
- Gill AL
- Gill SR
- Kim M
- Kates SL
- Schwarz EM
Longitudinal Intravital Imaging of the Bone Marrow (LIMB) for Analysis of the Race for the Surface in a Murine Osteomyelitis Model.; Journal of orthopaedic research : official publication of the Orthopaedic Research Society. 2023 Jan 09.
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- Kopycka-Kedzierawski DT
- Billings RJ
- Feng C
- Ragusa PG
- Flint K
- Watson GE
- Wong CL
- Manning S
- Gill SR
- O'Connor TG
A Prospective Longitudinal Study of Early Childhood Caries Onset in Initially Caries-Free Children.; JDR clinical and translational research. 2022 Jun 09.
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- McDavid A
- Laniewski N
- Grier A
- Gill AL
- Kessler HA
- Huyck H
- Carbonell E
- Holden-Wiltse J
- Bandyopadhyay S
- Carnahan J
- Dylag AM
- Topham DJ
- Falsey AR
- Caserta MT
- Pryhuber GS
- Gill SR
- Scheible KM
Aberrant newborn T cell and microbiota developmental trajectories predict respiratory compromise during infancy.; iScience; Vol 25(4). 2022 Apr 15.
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- Bui TI
- Gill AL
- Mooney RA
- Gill SR
Modulation of Gut Microbiota Metabolism in Obesity-Related Type 2 Diabetes Reduces Osteomyelitis Severity.; Microbiology spectrum. 2022 Mar 22.
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- Herman KE
- Yoshida T
- Hughson A
- Grier A
- Gill SR
- Beck LA
- Fowell DJ
IL-17-Dependent Dysregulated Cutaneous Immune Homeostasis in the Absence of the Wiskott-Aldrich Syndrome Protein.; Frontiers in immunology; Vol 13. 2022.
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- McCall MN
- Chu CY
- Wang L
- Benoodt L
- Thakar J
- Corbett A
- Holden-Wiltse J
- Slaunwhite C
- Grier A
- Gill SR
- Falsey AR
- Topham DJ
- Caserta MT
- Walsh EE
- Qiu X
- Mariani TJ
A systems genomics approach uncovers molecular associates of RSV severity.; PLoS computational biology; Vol 17(12). 2021 Dec 28.
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- Quivey RG
- O'Connor TG
- Gill SR
- Kopycka-Kedzierawski DT
Prediction of early childhood caries onset and oral microbiota.; Molecular oral microbiology. 2021 Jul 27.
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- Lambert PA
- Gill AL
- Gill SR
- Allen PD
- Man LX
Microbiomics of irrigation with xylitol or Lactococcus lactis in chronic rhinosinusitis.; Laryngoscope investigative otolaryngology; Vol 6(1). 2021 Feb.
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- Snell SB
- Gill AL
- Haidaris CG
- Foster TH
- Baran TM
- Gill SR
Staphylococcus aureus Tolerance and Genomic Response to Photodynamic Inactivation.; mSphere; Vol 6(1). 2021 Jan 06.
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- Masters EA
- Muthukrishnan G
- Ho L
- Gill AL
- de Mesy Bentley KL
- Galloway CA
- McGrath JL
- Awad HA
- Gill SR
- Schwarz EM
Staphylococcus aureus Cell Wall Biosynthesis Modulates Bone Invasion and Osteomyelitis Pathogenesis.; Frontiers in microbiology; Vol 12. 2021.
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- Wu TT
- Xiao J
- Sohn MB
- Fiscella KA
- Gilbert C
- Grier A
- Gill AL
- Gill SR
Machine Learning Approach Identified Multi-Platform Factors for Caries Prediction in Child-Mother Dyads.; Frontiers in cellular and infection microbiology; Vol 11. 2021.
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- Grier A
- Myers JA
- O'Connor TG
- Quivey RG
- Gill SR
- Kopycka-Kedzierawski DT
Oral Microbiota Composition Predicts Early Childhood Caries Onset.; Journal of dental research. 2020 Dec 24.
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- Masters EA
- de Mesy Bentley KL
- Gill AL
- Hao SP
- Galloway CA
- Salminen AT
- Guy DR
- McGrath JL
- Awad HA
- Gill SR
- Schwarz EM
Identification of Penicillin Binding Protein 4 (PBP4) as a critical factor for Staphylococcus aureus bone invasion during osteomyelitis in mice.; PLoS pathogens; Vol 16(10). 2020 Oct 22.
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- Grier A
- Gill AL
- Kessler HA
- Corbett A
- Bandyopadhyay S
- Java J
- Holden-Wiltse J
- Falsey AR
- Topham DJ
- Mariani TJ
- Caserta MT
- Walsh EE
- Gill SR
Temporal Dysbiosis of Infant Nasal Microbiota Relative to Respiratory Syncytial Virus Infection.; The Journal of infectious diseases. 2020 Sep 14.
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- Chu CY
- Qiu X
- McCall MN
- Wang L
- Corbett A
- Holden-Wiltse J
- Slaunwhite C
- Grier A
- Gill SR
- Pryhuber GS
- Falsey AR
- Topham DJ
- Caserta MT
- Walsh EE
- Mariani TJ
Airway gene expression correlates of RSV disease severity and microbiome composition in infants.; The Journal of infectious diseases. 2020 Sep 14.
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- Dunning Hotopp JC
- Baltrus DA
- Bruno VM
- Dennehy JJ
- Gill SR
- Maresca JA
- Matthijnssens J
- Newton ILG
- Putonti C
- Rasko DA
- Rokas A
- Roux S
- Stajich JE
- Stedman KM
- Stewart FJ
- Thrash JC
Best Practices for Successfully Writing and Publishing a Genome Announcement in Microbiology Resource Announcements.; Microbiology resource announcements; Vol 9(36). 2020 Sep 03.
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- McDavid A
- Corbett AM
- Dutra JL
- Straw AG
- Topham DJ
- Pryhuber GS
- Caserta MT
- Gill SR
- Scheible KM
- Holden-Wiltse J
Eight practices for data management to enable team data science.; Journal of clinical and translational science; Vol 5(1). 2020 Jun 23.
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- Xiao J
- Fiscella KA
- Gill SR
Oral microbiome: possible harbinger for children's health.; International journal of oral science; Vol 12(1). 2020 Apr 30.
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- Quinones Tavarez Z
- Li D
- Croft DP
- Gill SR
- Ossip DJ
- Rahman I
The Interplay Between Respiratory Microbiota and Innate Immunity in Flavor E-Cigarette Vaping Induced Lung Dysfunction.; Frontiers in microbiology; Vol 11. 2020.
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- Favazzo LJ
- Hendesi H
- Villani DA
- Soniwala S
- Dar QA
- Schott EM
- Gill SR
- Zuscik MJ
The gut microbiome-joint connection: implications in osteoarthritis.; Current opinion in rheumatology. 2019 Nov 12.
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- Sonawane AR
- Tian L
- Chu CY
- Qiu X
- Wang L
- Holden-Wiltse J
- Grier A
- Gill SR
- Caserta MT
- Falsey AR
- Topham DJ
- Walsh EE
- Mariani TJ
- Weiss ST
- Silverman EK
- Glass K
- Liu YY
Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection.; Scientific reports; Vol 9(1). 2019 Sep 25.
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- Caserta MT
- Yang H
- Bandyopadhyay S
- Qiu X
- Gill SR
- Java J
- McDavid A
- Falsey AR
- Topham DJ
- Holden-Wiltse J
- Scheible K
- Pryhuber G
Measuring the Severity of Respiratory Illness in the First 2 Years of Life in Preterm and Term Infants.; The Journal of pediatrics. 2019 Jul 31.
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- Masters EA
- Salminen AT
- Begolo S
- Luke EN
- Barrett S
- Overby CT
- Gill AL
- de Mesy Bentley KL
- Awad HA
- Gill SR
- Schwarz EM
- McGrath JL
An in vitro platform for elucidating the molecular genetics of S. aureus invasion of the osteocyte lacuno-canalicular network during chronic osteomyelitis.; Nanomedicine : nanotechnology, biology, and medicine. 2019 Jun 24.
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- Walsh EE
- Mariani TJ
- Chu C
- Grier A
- Gill SR
- Qiu X
- Wang L
- Holden-Wiltse J
- Corbett A
- Thakar J
- Benoodt L
- McCall MN
- Topham DJ
- Falsey AR
- Caserta MT
Aims, Study Design, and Enrollment Results From the Assessing Predictors of Infant Respiratory Syncytial Virus Effects and Severity Study.; JMIR research protocols; Vol 8(6). 2019 Jun 06.
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- Favazzo LJ
- Gill AL
- Farnsworth CW
- Mooney RA
- Gill SR
Response of nor and nos contributes to Staphylococcus aureus virulence and metabolism.; Journal of bacteriology. 2019 Feb 19.
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- Masters EA
- Trombetta RP
- de Mesy Bentley KL
- Boyce BF
- Gill AL
- Gill SR
- Nishitani K
- Ishikawa M
- Morita Y
- Ito H
- Bello-Irizarry SN
- Ninomiya M
- Brodell JD
- Lee CC
- Hao SP
- Oh I
- Xie C
- Awad HA
- Daiss JL
- Owen JR
- Kates SL
- Schwarz EM
- Muthukrishnan G
Evolving concepts in bone infection: redefining "biofilm", "acute vs. chronic osteomyelitis", "the immune proteome" and "local antibiotic therapy".; Bone research; Vol 7. 2019.
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- Grier A
- McDavid A
- Wang B
- Qiu X
- Java J
- Bandyopadhyay S
- Yang H
- Holden-Wiltse J
- Kessler HA
- Gill AL
- Huyck H
- Falsey AR
- Topham DJ
- Scheible KM
- Caserta MT
- Pryhuber GS
- Gill SR
Neonatal gut and respiratory microbiota: coordinated development through time and space.; Microbiome; Vol 6(1). 2018 Oct 26.
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- Oh I
- Muthukrishnan G
- Ninomiya MJ
- Brodell JD
- Smith BL
- Lee CC
- Gill SR
- Beck CA
- Schwarz EM
- Daiss JL
Tracking Anti-Staphylococcus aureus Antibodies Produced In Vivo and Ex Vivo during Foot Salvage Therapy for Diabetic Foot Infections Reveals Prognostic Insights and Evidence of Diversified Humoral Immunity.; Infection and immunity. 2018 Oct 01.
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- Xiao J
- Grier A
- Faustoferri RC
- Alzoubi S
- Gill AL
- Feng C
- Liu Y
- Quivey RG
- Kopycka-Kedzierawski DT
- Koo H
- Gill SR
Association between Oral Candida and Bacteriome in Children with Severe ECC.; Journal of dental research. 2018 Jul 26.
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- Farnsworth CW
- Schott EM
- Benvie A
- Kates SL
- Schwarz EM
- Gill SR
- Zuscik MJ
- Mooney RA
Exacerbated Staphylococcus aureus Foot Infections in Obese/Diabetic Mice Are Associated with Impaired Germinal Center Reactions, Ig Class Switching, and Humoral Immunity.; Journal of immunology (Baltimore, Md. : 1950). 2018 Jun 01.
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- Schott EM
- Farnsworth CW
- Grier A
- Lillis JA
- Soniwala S
- Dadourian GH
- Bell RD
- Doolittle ML
- Villani DA
- Awad H
- Ketz JP
- Kamal F
- Ackert-Bicknell C
- Ashton JM
- Gill SR
- Mooney RA
- Zuscik MJ
Targeting the gut microbiome to treat the osteoarthritis of obesity.; JCI insight; Vol 3(8). 2018 Apr 19.
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- Rieth KKS
- Gill SR
- Lott-Limbach AA
- Merkley MA
- Botero N
- Allen PD
- Miller MC
Prevalence of High-Risk Human Papillomavirus in Tonsil Tissue in Healthy Adults and Colocalization in Biofilm of Tonsillar Crypts.; JAMA otolaryngology-- head & neck surgery. 2018 Jan 25.
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- Farnsworth CW
- Schott EM
- Benvie AM
- Zukoski J
- Kates SL
- Schwarz EM
- Gill SR
- Zuscik MJ
- Mooney RA
Obesity/type 2 diabetes increases inflammation, periosteal reactive bone formation and osteolysis during Staphylococcus aureus implant-associated bone infection.; Journal of orthopaedic research : official publication of the Orthopaedic Research Society. 2017 Dec 11.
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- Grier A
- Qiu X
- Bandyopadhyay S
- Holden-Wiltse J
- Kessler HA
- Gill AL
- Hamilton B
- Huyck H
- Misra S
- Mariani TJ
- Ryan RM
- Scholer L
- Scheible KM
- Lee YH
- Caserta MT
- Pryhuber GS
- Gill SR
Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth.; Microbiome; Vol 5(1). 2017 Dec 11.
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- Caito SW
- Jackson BP
- Punshon T
- Scrimale T
- Grier A
- Gill SR
- Love TM
- Watson GE
- van Wijngaarden E
- Rand MD
Variation in Methylmercury Metabolism and Elimination Status (MerMES) in Humans Following Fish Consumption.; Toxicological sciences : an official journal of the Society of Toxicology. 2017 Nov 14.