URMC / Labs / McMurray Lab / Publications Recent Publications Sherina VMcMurray HRPowers WLand HLove TMTMcCall MN Correction: Multiple imputation and direct estimation for qPCR data with non-detects.; BMC bioinformatics; Vol 25(1), pp. 63. 2024 Feb 07. McMurray HRStern HAAmbeskovic ALand HMcCall MN Protocol to use TopNet for gene regulatory network modeling using gene expression data from perturbation experiments.; STAR protocols; Vol 3(4), pp. 101737. 2022 Sep 30. McMurray HRAmbeskovic ANewman LAAldersley JBalakrishnan VSmith BStern HALand HMcCall MN Gene network modeling via TopNet reveals functional dependencies between diverse tumor-critical mediator genes.; Cell reports; Vol 37(12). 2021 Dec 21. Sherina VMcMurray HRPowers WLand HLove TMTMcCall MN Multiple imputation and direct estimation for qPCR data with non-detects.; BMC bioinformatics; Vol 21(1). 2020 Nov 26. Azadniv MMyers JRMcMurray HRGuo NRock PCoppage MLAshton JBecker MWCalvi LMLiesveld JL Bone marrow mesenchymal stromal cells from acute myelogenous leukemia patients demonstrate adipogenic differentiation propensity with implications for leukemia cell support.; Leukemia. 2019 Sep 06. Wong ELLutz NMHogan VALamantia CEMcMurray HRMyers JRAshton JMMajewska AK Developmental alcohol exposure impairs synaptic plasticity without overtly altering microglial function in mouse visual cortex.; Brain, behavior, and immunity. 2017 Sep 13. McCall MNMcMurray HRLand HAlmudevar A On non-detects in qPCR data.; Bioinformatics (Oxford, England); Vol 30(16). 2014 Aug 15. Sampson ERMcMurray HRHassane DCNewman LSalzman PJordan CTLand H Gene signature critical to cancer phenotype as a paradigm for anticancer drug discovery.; Oncogene; Vol 32(33). 2013 Aug 15. Tran VMcCall MNMcMurray HRAlmudevar A On the underlying assumptions of threshold Boolean networks as a model for genetic regulatory network behavior.; Frontiers in genetics; Vol 4. 2013. Ashton JMBalys MNeering SJHassane DCCowley GRoot DEMiller PGEbert BLMcMurray HRLand HJordan CT Gene sets identified with oncogene cooperativity analysis regulate in vivo growth and survival of leukemia stem cells.; Cell stem cell; Vol 11(3). 2012 Sep 7. Almudevar AMcCall MNMcMurray HRLand H Fitting Boolean networks from steady state perturbation data; Statistical Applications in Genetics and Molecular Biology; Vol 10(1). 2011 Jan 01. McMurray HRSampson ERCompitello GKinsey CNewman LSmith BChen SRKlebanov LSalzman PYakovlev ALand H Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype.; Nature; Vol 453(7198). 2008 Jun 19. McMurray HRMcCance DJ Degradation of p53, not telomerase activation, by E6 is required for bypass of crisis and immortalization by human papillomavirus type 16 E6/E7.; Journal of virology; Vol 78(11). 2004 Jun. McMurray HRMcCance DJ Human papillomavirus type 16 E6 activates TERT gene transcription through induction of c-Myc and release of USF-mediated repression.; Journal of virology; Vol 77(18). 2003 Sep. McMurray HRNguyen DWestbrook TFMcAnce DJ Biology of human papillomaviruses.; International journal of experimental pathology; Vol 82(1). 2001 Feb.