Publications

• 1. Bender W
  2. Zhang Y
  3. Corbett A
  4. Chu C
  5. Grier A
  6. Wang L
  7. Qiu X
  8. McCall MN
  9. Topham DJ
  10. Walsh EE
  11. Mariani TJ
  12. Scheuermann R
  13. Caserta MT
  14. Anderson CS
  Association of disease severity and genetic variation during primary Respiratory Syncytial Virus infections.; BMC medical genomics; Vol 17(1), pp. 165. 2024 Jun 19.
• 1. Piepenbrink M
  2. Oladunni F
  3. Nogales A
  4. Khalil AM
  5. Fitzgerald T
  6. Hilimire TA
  7. Basu M
  8. Fucile C
  9. Topham DJ
  10. Rosenberg AF
  11. Martinez-Sobrido L
  12. Kobie JJ
  Correction for Piepenbrink et al., "Highly Cross-Reactive and Protective Influenza A Virus H3N2 Hemagglutinin- and Neuraminidase-Specific Human Monoclonal Antibodies".; Microbiology spectrum. 2024 Jan 30.
• 1. Sportiello M
  2. Poindexter A
  3. Reilly EC
  4. Geber A
  5. Lambert Emo K
  6. Jones TN
  7. Topham DJ
  Mouse Memory CD8 T Cell Subsets Defined by Tissue-Resident Memory Integrin Expression Exhibit Distinct Metabolic Profiles.; ImmunoHorizons; Vol 7(10), pp. 652-669. 2023 Oct 01.
• 1. Brady MT
  2. Laniewski N
  3. Strawderman M
  4. Chu CC
  5. Kanagaiah P
  6. Sangster MY
  7. Topham DJ
  8. Friedberg JW
  9. Zent CS
  Long-term results of vaccination with adjuvanted recombinant varicella zoster glycoprotein E during initial Bruton tyrosine kinase inhibitors therapy for chronic lymphocytic leukemia or lymphoplasmacytic lymphoma.; American journal of hematology. 2023 Jul 23.
• 1. Piepenbrink M
  2. Oladunni F
  3. Nogales A
  4. Khalil AM
  5. Fitzgerald T
  6. Basu M
  7. Fucile C
  8. Topham DJ
  9. Rosenberg AF
  10. Martinez-Sobrido L
  11. Kobie JJ
  Highly Cross-Reactive and Protective Influenza A Virus H3N2 Hemagglutinin- and Neuraminidase-Specific Human Monoclonal Antibodies.; Microbiology spectrum. 2023 Jun 15.
• 1. Villamayor L
  2. Rivero V
  3. López-García D
  4. Topham DJ
  5. Martínez-Sobrido L
  6. Nogales A
  7. DeDiego ML
  Interferon alpha inducible protein 6 is a negative regulator of innate immune responses by modulating RIG-I activation.; Frontiers in immunology; Vol 14, pp. 1105309. 2023 Jan 30.
• 1. Yu J
  2. Tycksen E
  3. Yang W
  4. Mariani TJ
  5. Bhattacharya S
  6. Falsey AR
  7. Topham DJ
  8. Storch GA
  Use of Host Response to Refine the Diagnosis of Group A Streptococcal Pharyngitis.; Journal of the Pediatric Infectious Diseases Society. 2022 Sep 25.
• 1. McDavid A
  2. Laniewski N
  3. Grier A
  4. Gill AL
  5. Kessler HA
  6. Huyck H
  7. Carbonell E
  8. Holden-Wiltse J
  9. Bandyopadhyay S
  10. Carnahan J
  11. Dylag AM
  12. Topham DJ
  13. Falsey AR
  14. Caserta MT
  15. Pryhuber GS
  16. Gill SR
  17. Scheible KM
  Aberrant newborn T cell and microbiota developmental trajectories predict respiratory compromise during infancy.; iScience; Vol 25(4). 2022 Apr 15.
• 1. Moritzky SA
  2. Richards KA
  3. Glover MA
  4. Krammer F
  5. Chaves FA
  6. Topham DJ
  7. Branche A
  8. Nayak JL
  9. Sant AJ
  The negative effect of pre-existing immunity on influenza vaccine responses transcends the impact of vaccine formulation type and vaccination history.; The Journal of infectious diseases. 2022 Feb 24.
• 1. Embong AK
  2. Nguyen-Contant P
  3. Wang J
  4. Kanagaiah P
  5. Chaves FA
  6. Fitzgerald TF
  7. Zhou Q
  8. Kosoy G
  9. Branche AR
  10. Miller BL
  11. Zand MS
  12. Sangster MY
  13. Topham DJ
  Formation and Expansion of Memory B Cells against Coronavirus in Acutely Infected COVID-19 Individuals.; Pathogens (Basel, Switzerland); Vol 11(2). 2022 Jan 29.
• 1. McCall MN
  2. Chu CY
  3. Wang L
  4. Benoodt L
  5. Thakar J
  6. Corbett A
  7. Holden-Wiltse J
  8. Slaunwhite C
  9. Grier A
  10. Gill SR
  11. Falsey AR
  12. Topham DJ
  13. Caserta MT
  14. Walsh EE
  15. Qiu X
  16. Mariani TJ
  A systems genomics approach uncovers molecular associates of RSV severity.; PLoS computational biology; Vol 17(12). 2021 Dec 28.
• 1. Young BE
  2. Seppo AE
  3. Diaz N
  4. Rosen-Carole C
  5. Nowak-Wegrzyn A
  6. Cruz Vasquez JM
  7. Ferri-Huerta R
  8. Nguyen-Contant P
  9. Fitzgerald T
  10. Sangster MY
  11. Topham DJ
  12. Järvinen KM
  Association of Human Milk Antibody Induction, Persistence, and Neutralizing Capacity With SARS-CoV-2 Infection vs mRNA Vaccination.; JAMA pediatrics. 2021 Nov 10.
• 1. Yee Mon KJ
  2. Zhu H
  3. Daly CWP
  4. Vu LT
  5. Smith NL
  6. Patel R
  7. Topham DJ
  8. Scheible K
  9. Jambo K
  10. Le MTN
  11. Rudd BD
  12. Grimson A
  MicroRNA-29 specifies age-related differences in the CD8+ T cell immune response.; Cell reports; Vol 37(6). 2021 Nov 09.
• 1. Nguyen-Contant P
  2. Sangster MY
  3. Topham DJ
  Squalene-Based Influenza Vaccine Adjuvants and Their Impact on the Hemagglutinin-Specific B Cell Response.; Pathogens (Basel, Switzerland); Vol 10(3). 2021 Mar 17.
• 1. Wang L
  2. Chu CY
  3. McCall MN
  4. Slaunwhite C
  5. Holden-Wiltse J
  6. Corbett A
  7. Falsey AR
  8. Topham DJ
  9. Caserta MT
  10. Mariani TJ
  11. Walsh EE
  12. Qiu X
  Airway gene-expression classifiers for respiratory syncytial virus (RSV) disease severity in infants.; BMC medical genomics; Vol 14(1). 2021 Feb 25.
• 1. Pace RM
  2. Williams JE
  3. Järvinen KM
  4. Belfort MB
  5. Pace CDW
  6. Lackey KA
  7. Gogel AC
  8. Nguyen-Contant P
  9. Kanagaiah P
  10. Fitzgerald T
  11. Ferri R
  12. Young B
  13. Rosen-Carole C
  14. Diaz N
  15. Meehan CL
  16. Caffé B
  17. Sangster MY
  18. Topham D
  19. McGuire MA
  20. Seppo A
  21. McGuire MK
  Characterization of SARS-CoV-2 RNA, Antibodies, and Neutralizing Capacity in Milk Produced by Women with COVID-19.; mBio; Vol 12(1). 2021 Feb 09.
• 1. Lorbach JN
  2. Fitzgerald T
  3. Nolan C
  4. Nolting JM
  5. Treanor JJ
  6. Topham DJ
  7. Bowman AS
  Gaps in Serologic Immunity against Contemporary Swine-Origin Influenza A Viruses among Healthy Individuals in the United States.; Viruses; Vol 13(1). 2021 Jan 18.
• 1. Reilly EC
  2. Sportiello M
  3. Emo KL
  4. Amitrano AM
  5. Jha R
  6. Kumar ABR
  7. Laniewski NG
  8. Yang H
  9. Kim M
  10. Topham DJ
  CD49a Identifies Polyfunctional Memory CD8 T Cell Subsets that Persist in the Lungs After Influenza Infection.; Frontiers in immunology; Vol 12. 2021.
• 1. Nguyen-Contant P
  2. Embong AK
  3. Topham DJ
  4. Sangster MY
  Analysis of Antigen-Specific Human Memory B Cell Populations Based on In Vitro Polyclonal Stimulation.; Current protocols in immunology; Vol 131(1). 2020 Dec.
• 1. Alon R
  2. Sportiello M
  3. Kozlovski S
  4. Kumar A
  5. Reilly EC
  6. Zarbock A
  7. Garbi N
  8. Topham DJ
  Leukocyte trafficking to the lungs and beyond: lessons from influenza for COVID-19.; Nature reviews. Immunology. 2020 Nov 19.
• 1. Zent CS
  2. Brady MT
  3. Delage C
  4. Strawderman M
  5. Laniewski N
  6. Contant PN
  7. Kanagaiah P
  8. Sangster MY
  9. Barr PM
  10. Chu CC
  11. Topham DJ
  12. Friedberg JW
  Short term results of vaccination with adjuvanted recombinant varicella zoster glycoprotein E during initial BTK inhibitor therapy for CLL or lymphoplasmacytic lymphoma.; Leukemia. 2020 Oct 30.
• 1. Nguyen-Contant P
  2. Embong AK
  3. Kanagaiah P
  4. Chaves FA
  5. Yang H
  6. Branche AR
  7. Topham DJ
  8. Sangster MY
  S Protein-Reactive IgG and Memory B Cell Production after Human SARS-CoV-2 Infection Includes Broad Reactivity to the S2 Subunit.; mBio; Vol 11(5). 2020 Sep 25.
• 1. Steiner DJ
  2. Cognetti JS
  3. Luta EP
  4. Klose AM
  5. Bucukovski J
  6. Bryan MR
  7. Schmuke JJ
  8. Nguyen-Contant P
  9. Sangster MY
  10. Topham DJ
  11. Miller BL
  Array-based analysis of SARS-CoV-2, other coronaviruses, and influenza antibodies in convalescent COVID-19 patients.; Biosensors & bioelectronics; Vol 169. 2020 Sep 21.
• 1. Pace RM
  2. Williams JE
  3. Järvinen KM
  4. Belfort MB
  5. Pace CD
  6. Lackey KA
  7. Gogel AC
  8. Nguyen-Contant P
  9. Kanagaiah P
  10. Fitzgerald T
  11. Ferri R
  12. Young B
  13. Rosen-Carole C
  14. Diaz N
  15. Meehan C
  16. Caffe B
  17. Sangster MY
  18. Topham DJ
  19. McGuire MA
  20. Seppo A
  21. McGuire MK
  COVID-19 and human milk: SARS-CoV-2, antibodies, and neutralizing capacity.; medRxiv : the preprint server for health sciences. 2020 Sep 18.
• 1. Grier A
  2. Gill AL
  3. Kessler HA
  4. Corbett A
  5. Bandyopadhyay S
  6. Java J
  7. Holden-Wiltse J
  8. Falsey AR
  9. Topham DJ
  10. Mariani TJ
  11. Caserta MT
  12. Walsh EE
  13. Gill SR
  Temporal Dysbiosis of Infant Nasal Microbiota Relative to Respiratory Syncytial Virus Infection.; The Journal of infectious diseases. 2020 Sep 14.
• 1. Chu CY
  2. Qiu X
  3. McCall MN
  4. Wang L
  5. Corbett A
  6. Holden-Wiltse J
  7. Slaunwhite C
  8. Grier A
  9. Gill SR
  10. Pryhuber GS
  11. Falsey AR
  12. Topham DJ
  13. Caserta MT
  14. Walsh EE
  15. Mariani TJ
  Airway gene expression correlates of RSV disease severity and microbiome composition in infants.; The Journal of infectious diseases. 2020 Sep 14.
• 1. Gouma S
  2. Kim K
  3. Weirick ME
  4. Gumina ME
  5. Branche A
  6. Topham DJ
  7. Martin ET
  8. Monto AS
  9. Cobey S
  10. Hensley SE
  Middle-aged individuals may be in a perpetual state of H3N2 influenza virus susceptibility.; Nature communications; Vol 11(1). 2020 Sep 11.
• 1. Richards KA
  2. Moritzky S
  3. Shannon I
  4. Fitzgerald T
  5. Yang H
  6. Branche A
  7. Topham DJ
  8. Treanor JJ
  9. Nayak J
  10. Sant AJ
  Recombinant HA-based vaccine outperforms split and subunit vaccines in elicitation of influenza-specific CD4 T cells and CD4 T cell-dependent antibody responses in humans.; NPJ vaccines; Vol 5(1). 2020 Aug 26.
• 1. Thakar J
  2. Qian Y
  3. Benoodt L
  4. Roumanes D
  5. Qiu X
  6. Laniewski N
  7. Chu C
  8. Slaunwhite C
  9. Wang L
  10. Mandava A
  11. Chang I
  12. Falsey AR
  13. Caserta MT
  14. Mariani TJ
  15. Scheuermann RH
  16. Walsh EE
  17. Topham DJ
  Unbiased analysis of peripheral blood mononuclear cells reveals CD4 T cell response to RSV matrix protein.; Vaccine: X; Vol 5. 2020 Aug 07.
• 1. Lim K
  2. Kim TH
  3. Trzeciak A
  4. Amitrano AM
  5. Reilly EC
  6. Prizant H
  7. Fowell DJ
  8. Topham DJ
  9. Kim M
  In situ neutrophil efferocytosis shapes T cell immunity to influenza infection.; Nature immunology. 2020 Aug 03.
• 1. Vom Steeg LG
  2. Dhakal S
  3. Woletsadik YA
  4. Park HS
  5. Mulka KR
  6. Reilly EC
  7. Topham DJ
  8. Klein SL
  Androgen receptor signaling in the lungs mitigates inflammation and improves the outcome of influenza in mice.; PLoS pathogens; Vol 16(7). 2020 Jul 09.
• 1. McDavid A
  2. Corbett AM
  3. Dutra JL
  4. Straw AG
  5. Topham DJ
  6. Pryhuber GS
  7. Caserta MT
  8. Gill SR
  9. Scheible KM
  10. Holden-Wiltse J
  Eight practices for data management to enable team data science.; Journal of clinical and translational science; Vol 5(1). 2020 Jun 23.
• 1. Anderson CS
  2. Sangster MY
  3. Yang H
  4. Mariani TJ
  5. Chaudhury S
  6. Topham DJ
  Implementing sequence-based antigenic distance calculation into immunological shape space model.; BMC bioinformatics; Vol 21(1). 2020 Jun 19.
• 1. Reilly EC
  2. Lambert Emo K
  3. Buckley PM
  4. Reilly NS
  5. Smith I
  6. Chaves FA
  7. Yang H
  8. Oakes PW
  9. Topham DJ
  TRM integrins CD103 and CD49a differentially support adherence and motility after resolution of influenza virus infection.; Proceedings of the National Academy of Sciences of the United States of America; Vol 117(22). 2020 Jun 02.
• 1. Meilleur CE
  2. Memarnejadian A
  3. Shivji AN
  4. Benoit JM
  5. Tuffs SW
  6. Mele TS
  7. Singh B
  8. Dikeakos JD
  9. Topham DJ
  10. Mu HH
  11. Bennink JR
  12. McCormick JK
  13. Haeryfar SMM
  Discordant rearrangement of primary and anamnestic CD8+ T cell responses to influenza A viral epitopes upon exposure to bacterial superantigens: Implications for prophylactic vaccination, heterosubtypic immunity and superinfections.; PLoS pathogens; Vol 16(5). 2020 May.
• 1. Moore KA
  2. Ostrowsky JT
  3. Mehr AJ
  4. Osterholm MT
  Influenza response planning for the centers of excellence for influenza research and surveillance: Science preparedness for enhancing global health security.; Influenza and other respiratory viruses. 2020 Apr 19.
• 1. Topham DJ
  Serendipity: Reflections on Being Mentored by Dr. Peter Doherty.; Viral immunology; Vol 33(3). 2020 Apr.
• 1. Martinez-Sobrido L
  2. Blanco-Lobo P
  3. Rodriguez L
  4. Fitzgerald T
  5. Zhang H
  6. Nguyen P
  7. Anderson CS
  8. Holden-Wiltse J
  9. Bandyopadhyay S
  10. Nogales A
  11. DeDiego ML
  12. Wasik BR
  13. Miller BL
  14. Henry C
  15. Wilson PC
  16. Sangster MY
  17. Treanor JJ
  18. Topham DJ
  19. Byrd-Leotis L
  20. Steinhauer DA
  21. Cummings RD
  22. Luczo JM
  23. Tompkins SM
  24. Sakamoto K
  25. Jones CA
  26. Steel J
  27. Lowen AC
  28. Danzy S
  29. Tao H
  30. Fink AL
  31. Klein SL
  32. Wohlgemuth N
  33. Fenstermacher KJ
  34. El Najjar F
  35. Pekosz A
  36. Sauer L
  37. Lewis MK
  38. Shaw-Saliba K
  39. Rothman RE
  40. Liu ZY
  41. Chen KF
  42. Parrish CR
  43. Voorhees IEH
  44. Kawaoka Y
  45. Neumann G
  46. Chiba S
  47. Fan S
  48. Hatta M
  49. Kong H
  50. Zhong G
  51. Wang G
  52. Uccellini MB
  53. García-Sastre A
  54. Perez DR
  55. Ferreri LM
  56. Herfst S
  57. Richard M
  58. Fouchier R
  59. Burke D
  60. Pattinson D
  61. Smith DJ
  62. Meliopoulos V
  63. Freiden P
  64. Livingston B
  65. Sharp B
  66. Cherry S
  67. Dib JC
  68. Yang G
  69. Russell CJ
  70. Barman S
  71. Webby RJ
  72. Krauss S
  73. Danner A
  74. Woodard K
  75. Peiris M
  76. Perera RAPM
  77. Chan MCW
  78. Govorkova EA
  79. Marathe BM
  80. Pascua PNQ
  81. Smith G
  82. Li YT
  83. Thomas PG
  84. Schultz-Cherry S
  Characterizing Emerging Canine H3 Influenza Viruses.; PLoS pathogens; Vol 16(4). 2020 Apr.
• 1. Veazey JM
  2. Eliseeva SI
  3. Hillman SE
  4. Stiles K
  5. Smyth TR
  6. Morrissey CE
  7. Tillotson EJ
  8. Topham DJ
  9. Chapman TJ
  10. Georas SN
  Inhibiting Protein Kinase D Promotes Airway Epithelial Barrier Integrity in Mouse Models of Influenza A Virus Infection.; Frontiers in immunology; Vol 11. 2020.
• 1. Emo K
  2. Reilly EC
  3. Sportiello M
  4. Yang H
  5. Topham DJ
  T cell and chemokine receptors differentially control CD8 T cell motility behavior in the infected airways immediately before and after virus clearance in a primary infection.; PloS one; Vol 15(8). 2020.
• 1. Richards KA
  2. Moritzky S
  3. Shannon I
  4. Fitzgerald T
  5. Yang H
  6. Branche A
  7. Topham DJ
  8. Treanor JJ
  9. Nayak J
  10. Sant AJ
  Recombinant HA-based vaccine outperforms split and subunit vaccines in elicitation of influenza-specific CD4 T cells and CD4 T cell-dependent antibody responses in humans.; NPJ vaccines; Vol 5. 2020.
• 1. Topham DJ
  2. DeDiego ML
  3. Nogales A
  4. Sangster MY
  5. Sant A
  Immunity to Influenza Infection in Humans.; Cold Spring Harbor perspectives in medicine. 2019 Dec 30.
• 1. Smith A
  2. Rodriguez L
  3. Ghouayel ME
  4. Nogales A
  5. Chamberlain JM
  6. Sortino K
  7. Reilly E
  8. Feng C
  9. Topham DJ
  10. Martínez-Sobrido L
  11. Dewhurst S
  A live-attenuated influenza vaccine (LAIV) elicits enhanced heterologous protection when the internal genes of the vaccine are matched to the challenge virus.; Journal of virology. 2019 Nov 20.
• 1. DeDiego ML
  2. Martinez-Sobrido L
  3. Topham DJ
  Novel Functions of IFI44L as a Feedback Regulator of Host Antiviral Responses.; Journal of virology; Vol 93(21). 2019 Nov 01.
• 1. Henry C
  2. Palm AE
  3. Utset HA
  4. Huang M
  5. Ho IY
  6. Zheng NY
  7. Fitzgerald T
  8. Neu KE
  9. Chen YQ
  10. Krammer F
  11. Treanor JJ
  12. Sant AJ
  13. Topham DJ
  14. Wilson PC
  Monoclonal Antibody Responses after Recombinant Hemagglutinin Vaccine versus Subunit Inactivated Influenza Virus Vaccine: a Comparative Study.; Journal of virology; Vol 93(21). 2019 Nov 01.
• 1. Topham DJ
  2. Reilly EC
  3. Emo KL
  4. Sportiello M
  Formation and Maintenance of Tissue Resident Memory CD8+ T Cells after Viral Infection.; Pathogens (Basel, Switzerland); Vol 8(4). 2019 Oct 18.
• 1. Rodriguez L
  2. Blanco-Lobo P
  3. Reilly EC
  4. Maehigashi T
  5. Nogales A
  6. Smith A
  7. Topham DJ
  8. Dewhurst S
  9. Kim B
  10. Martínez-Sobrido L
  Comparative Study of the Temperature Sensitive, Cold Adapted and Attenuated Mutations Present in the Master Donor Viruses of the Two Commercial Human Live Attenuated Influenza Vaccines.; Viruses; Vol 11(10). 2019 Oct 10.
• 1. Gouma S
  2. Zost SJ
  3. Parkhouse K
  4. Branche A
  5. Topham DJ
  6. Cobey S
  7. Hensley SE
  Comparison of human H3N2 antibody responses elicited by egg-based, cell-based, and recombinant protein-based influenza vaccines during the 2017-2018 season.; Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2019 Oct 09.
• 1. Sangster MY
  2. Nguyen PQT
  3. Topham DJ
  Role of Memory B Cells in Hemagglutinin-Specific Antibody Production Following Human Influenza A Virus Infection.; Pathogens (Basel, Switzerland); Vol 8(4). 2019 Sep 28.
• 1. Sonawane AR
  2. Tian L
  3. Chu CY
  4. Qiu X
  5. Wang L
  6. Holden-Wiltse J
  7. Grier A
  8. Gill SR
  9. Caserta MT
  10. Falsey AR
  11. Topham DJ
  12. Walsh EE
  13. Mariani TJ
  14. Weiss ST
  15. Silverman EK
  16. Glass K
  17. Liu YY
  Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection.; Scientific reports; Vol 9(1). 2019 Sep 25.