URMC / Labs / Uddin Lab / Publications Publications Parker KJKabir IEDoyley MMFaiyaz AUddin MNFlores GSchifitto G Brain elastography in aging relates to fluid/solid trendlines.; Physics in medicine and biology; Vol 69(11). 2024 May 29. Carter SLPatel RFisk JDFigley CRMarrie RAMazerolle ELUddin MNWong KGraff LABolton JAMarriott JJ Differences in resting state functional connectivity relative to multiple sclerosis and impaired information processing speed; Frontiers in Neurology; Vol 14. 2023 Jan 01. Patel RMarrie RABernstein CNBolton JMGraff LAMarriott JJFigley CRKornelsen JMazerolle ELHelmick CUddin MNFisk JD Vascular Disease Is Associated With Differences in Brain Structure and Lower Cognitive Functioning in Inflammatory Bowel Disease: A Cross-Sectional Study.; Inflammatory bowel diseases. 2023 Sep 22. Singh MUddin MNSingh VBPeterson ANMurray KDZhuang YTyrell AWang LTivarus MEZhong JQiu XSchifitto G Initiation of combined antiretroviral therapy confers suboptimal beneficial effects on neurovascular function in people with HIV; Frontiers in Neurology; Vol 14. 2023 Jan 01. Aja-Fernández SMartín-Martín CPlanchuelo-Gómez ÁFaiyaz AUddin MNSchifitto GTiwari AShigwan SJKumar Singh RZheng TCao ZWu DBlumberg SBSen SGoodwin-Allcock TSlator PJYigit Avci MLi ZBilgic BTian QWang XTang ZCabezas MRauland AMerhof DManzano Maria RCampos VPSantini Tda Costa Vieira MAHashemizadehKolowri SDiBella EPeng CShen ZChen ZUllah IMani MAbdolmotalleby HEckstrom SBaete SHFilipiak PDong TFan Qde Luis-García RTristán-Vega APieciak T Validation of deep learning techniques for quality augmentation in diffusion MRI for clinical studies.; NeuroImage. Clinical; Vol 39, pp. 103483. 2023 Jul 28. Faiyaz ADoyley MSchifitto GUddin MN Artificial intelligence for diffusion MRI-based tissue microstructure estimation in the human brain: an overview; Frontiers in Neurology; Vol 14(700), pp. 1-9. 2023 Jan 01. Patel RMarrie RABernstein CNBolton JMGraff LAMarriott JJFigley CRKornelsen JMazerolle ELUddin MNFisk JD Vascular comorbidity is associated with decreased cognitive functioning in inflammatory bowel disease.; Scientific reports; Vol 13(1), pp. 4317. 2023 Mar 15. Singh MVUddin MNCovacevich VMSutton KRBoodoo ZDPeterson ATyrell ABrenner RTivarus MEWang HZSahin BZhong JWeber MWang LQiu XMaggiwar SBSchifitto G Role of non-classical monocytes in HIV-associated vascular cognitive impairment; medRxiv. 2023 Jan 01. Murray KDTivarus MESchifitto GUddin MNZhong J Brain iron imaging markers in the presence of white matter hyperintensities.; Magnetic resonance imaging. 2023 Jan 19. Kornelsen JMcIver TUddin MNFigley CRMarrie RAPatel RFisk JDCarter SGraff LMazerolle ELBernstein CN Altered voxel-based and surface-based morphometry in inflammatory bowel disease.; Brain research bulletin; Vol 203, pp. 110771. 2023 Jan 04. Uddin MNTivarus MESchifitto GRudko DA Neuroimaging of Neuroinflammation in Neurological Disorders; Frontiers in Neurology; Vol 14(1328511). 2023 Jan 01. Patel RMarrie RABernstein CNBolton JMGraff LAMarriott JJFigley CRKornelsen JMazerolle ELUddin MNFisk JD Vascular comorbidity is associated with decreased cognitive functioning in inflammatory bowel disease; . 2022 Jan 01. Faiyaz AUddin MNSchifitto G Angular upsampling in diffusion MRI using contextual HemiHex sub-sampling in q-space; . 2022 Jan 01. Uddin MNFigley TDKornelsen JMazerolle ELHelmick CAO'Grady CBPirzada SPatel RCarter SWong KEssig MRGraff LABolton JMMarriott JJBernstein CNFisk JDMarrie RAFigley CR The Comorbidity and Cognition in Multiple Sclerosis (CCOMS) neuroimaging protocol: study rationale, MRI acquisition, and minimal image processing pipelines; Frontiers in Neuroimaging; Vol 1(970385). 2022 Jan 01. Weber MTFinkelstein AUddin MNReddy EAArduino RCWang LTivarus MEZhong JQui XSchifitto G Longitudinal Effects of Combination Antiretroviral Therapy on Cognition and Neuroimaging Biomarkers in Treatment-Naïve People with HIV.; Neurology. 2022 Jun 22. Marrie RAPatel RFigley CRKornelsen JBolton JMGraff LAMazerolle ELHelmick CUddin MNFigley TDMarriott JJBernstein CNFisk JD Effects of Vascular Comorbidity on Cognition in Multiple Sclerosis Are Partially Mediated by Changes in Brain Structure.; Frontiers in neurology; Vol 13. 2022. Faiyaz ADoyley MSchifitto GZhong JUddin MN Single-shell NODDI using dictionary-learner-estimated isotropic volume fraction.; NMR in biomedicine. 2021 Oct 12. Murray KDUddin MNTivarus MESahin BWang HZSingh MVQiu XWang LSpincemaille PWang YMaggirwar SBZhong JSchifitto G Increased risk for cerebral small vessel disease is associated with quantitative susceptibility mapping in HIV infected and uninfected individuals.; NeuroImage. Clinical; Vol 32. 2021 Aug 28. Das SYasmin MRArefin MTaher KAUddin MNRahman MA Mixed Bangla-English Spoken Digit Classification Using Convolutional Neural Network; Applied Intelligence and Informatics pp 371–383; Vol 1435, pp. 371-383. 2021 Jan 01. Marrie RAPatel RFigley CRKornelsen JBolton JMGraff LAMazerolle ELHelmick CO'Grady CUddin MNMarriott JJBernstein CNFisk JD Higher Framingham Risk Scores are associated with greater loss of brain volume over time in multiple sclerosis.; Multiple sclerosis and related disorders; Vol 54. 2021 Jun 17. Uddin MNFaiyaz AWang LZhuang YMurray KDDescoteaux MTivarus MEWeber MTZhong JQiu XSchifitto G A longitudinal analysis of brain extracellular free water in HIV infected individuals.; Scientific reports; Vol 11(1). 2021 Apr 15. Uddin MNTivarus MAdams HLittle ESchifitto GLande MB Magnetic Resonance Imaging in Childhood Primary Hypertension: Potential in the Study of Cognitive Outcomes.; Hypertension (Dallas, Tex. : 1979); Vol 77(3). 2021 Mar 03. Murray KDTivarus MTSchifitto GUddin MNZhong J Brain Iron Imaging Markers in the Presence of White Matter Hyperintensities; bioRxiv. 2021 Jan 01. Finkelstein AFaiyaz AWeber MTQiu XUddin MNZhong JSchifitto G Fixel-Based Analysis and Free Water Corrected DTI Evaluation of HIV-Associated Neurocognitive Disorders.; Frontiers in neurology; Vol 12. 2021. Figley CRUddin MNWong KKornelsen JPuig JFigley TD Potential Pitfalls of Using Fractional Anisotropy, Axial Diffusivity, and Radial Diffusivity as Biomarkers of Cerebral White Matter Microstructure.; Frontiers in neuroscience; Vol 15. 2021. Uddin MNFaiyaz AWang LZhuang YMurray KDDescoteaux MTivarus MEWeber MTZhong JQiu XSchifitto G Linking Neuroinflammation and Extracellular Free Water in HIV Infection: A Longitudinal Study; . 2020 Jan 01. Puig JBiarnes CPedraza SVilanova JCPamplona RFernández-Real JMBrugada RRamos RColl-de-Tuero GCalvo-Perxas LSerena JRamió-Torrentà LGich JGallart LPortero-Otin MAlberich-Bayarri AJimenez-Pastor ACamacho-Ramos EMayneris-Perxachs JPineda VFont RPrats-Puig AGacto MLDeco GEscrichs AClotet BParedes RNegredo ETriaire BRodríguez MHeredia-Escámez ACoronado Rde Graaf WPrevost VMitulescu ADaunis-I-Estadella PThió-Henestrosa SMiralles FRibas-Ripoll VPuig-Domingo MEssig MFigley CRFigley TDAlbensi BAshraf AReiber JHCSchifitto GMd Nasir ULeiva-Salinas CWintermark MNael KVilalta-Franch JBarretina JGarre-Olmo J The Aging Imageomics Study: rationale, design and baseline characteristics of the study population.; Mechanisms of ageing and development; Vol 189. 2020 May 11. Pirzada SUddin MNFigley TDKornelsen JPuig JMarrie RAMazerolle ELFisk JDHelmick CAO'Grady CBPatel RFigley CR Spatial normalization of multiple sclerosis brain MRI data depends on analysis method and software package.; Magnetic resonance imaging; Vol 68. 2020 May. Murray KDSingh MVZhuang YUddin MNQiu XWeber MTTivarus MEWang HZSahin BZhong JMaggirwar SBSchifitto G Pathomechanisms of HIV-Associated Cerebral Small Vessel Disease: A Comprehensive Clinical and Neuroimaging Protocol and Analysis Pipeline.; Frontiers in neurology; Vol 11. 2020. Uddin MNFigley TDSolar KGShatil ASFigley CR Comparisons between multi-component myelin water fraction, T1w/T2w ratio, and diffusion tensor imaging measures in healthy human brain structures.; Scientific reports; Vol 9(1). 2019 Feb 21. Uddin MNFigley TDFigley CR Effect of echo time and T2-weighting on GRASE-based T1w/T2w ratio measurements at 3T.; Magnetic resonance imaging; Vol 51. 2018 Sep. Uddin MNFigley TDMarrie RAFigley CR Can T1 w/T2 w ratio be used as a myelin-specific measure in subcortical structures? Comparisons between FSE-based T1 w/T2 w ratios, GRASE-based T1 w/T2 w ratios and multi-echo GRASE-based myelin water fractions.; NMR in biomedicine; Vol 31(3). 2018 Mar. Shatil ASUddin MNMatsuda KMFigley CR Quantitative Ex Vivo MRI Changes due to Progressive Formalin Fixation in Whole Human Brain Specimens: Longitudinal Characterization of Diffusion, Relaxometry, and Myelin Water Fraction Measurements at 3T.; Frontiers in medicine; Vol 5. 2018. Uddin MNFigley TDMarie RAFigley CR Comparison of Multi-echo Gradient and Spin Echo (GRASE) and Fast Spin Echo (FSE) MRI Sequences for T1w/T2w Ratio Mapping; CMBES Proceedings; Vol 40. 2018 Jan 01. Uddin MNFigley TDMarrie RAFigley CR Comparison of Multi-echo Gradient and Spin Echo (GRASE) and Fast Spin Echo (FSE) MRI Sequences for T1w/T2w Ratio Mapping; CMBES Proceedings; Vol 40. 2017 Jan 01. Uddin MNMcPhee KCBlevins GWilman AH Recovery of accurate T2 from historical 1.5 tesla proton density and T2-weighted images: Application to 7-year T2 changes in multiple sclerosis brain.; Magnetic resonance imaging; Vol 37. 2017 Apr. Uddin MNLebel RMSeres PBlevins GWilman AH Spin echo transverse relaxation and atrophy in multiple sclerosis deep gray matter: A two-year longitudinal study.; Multiple sclerosis (Houndmills, Basingstoke, England); Vol 22(9). 2016 Aug. Uddin MNLebel RMWilman AH Value of transverse relaxometry difference methods for iron in human brain.; Magnetic resonance imaging; Vol 34(1). 2016 Jan. Uddin MNMarc Lebel RWilman AH Transverse relaxometry with reduced echo train lengths via stimulated echo compensation.; Magnetic resonance in medicine; Vol 70(5). 2013 Nov. Uddin MNMorrow MR Bicellar mixture phase behavior examined by variable-pressure deuterium NMR and ambient pressure DSC.; Langmuir : the ACS journal of surfaces and colloids; Vol 26(14). 2010 Jul 20.