URMC / Labs / Hayes Lab / Publications

Recent Publications

1. Cosler LE
2. Midence L
3. Hayes JJ
4. Gondeck JT
5. Moy K
6. Chen MH
7. Hogan JD
The Influence of State Restrictions on Opioid Prescribing: 2006-2018.; Journal of public health management and practice : JPHMP. 2024 Sep 24.
1. Kanti Das S
2. Kumar A
3. Hao F
4. Cutter DiPiazza AR
5. Fang H
6. Lee TH
7. Hayes JJ
Histone H3 tail modifications alter structure and dynamics of the H1 C-terminal domain within nucleosomes.; Journal of molecular biology. 2023 Aug 22.
1. Das SK
2. Kumar A
3. Hao F
4. DiPiazza ARC
5. Lee TH
6. Hayes JJ
Histone H3 tail modifications regulate structure and dynamics of the H1 C-terminal domain within nucleosomes.; bioRxiv : the preprint server for biology. 2023 May 12.
1. Kumar A
2. Maurya P
3. Hayes JJ
Post-Translation Modifications and Mutations of Human Linker Histone Subtypes: Their Manifestation in Disease.; International journal of molecular sciences; Vol 24(2). 2023 Jan 11.
1. Bhat JA
2. Balliano AJ
3. Hayes JJ
Histone protein surface accessibility dictates direction of RSC-dependent nucleosome mobilization.; Nucleic acids research. 2022 Sep 26.
1. Hao F
2. Mishra L
3. Jaya P
4. Jones R
5. Hayes JJ
Identification and analysis of six phosphorylation sites within the Xenopus laevis H1.0 C-terminal domain indicate distinct effects on nucleosome structure.; Molecular & cellular proteomics : MCP. 2022 May 23.
1. Marr LT
2. Jaya P
3. Mishra LN
4. Hayes JJ
Whole-genome methods to define DNA and histone accessibility and long-range interactions in chromatin.; Biochemical Society transactions. 2022 Feb 15.
1. Husain F
2. Yadav A
3. Sah SK
4. Hayes JJ
5. Rustchenko E
Candida albicans Strains Adapted to Caspofungin Due to Aneuploidy Become Highly Tolerant under Continued Drug Pressure.; Microorganisms; Vol 11(1). 2022 Jan 21.
1. Sah SK
2. Bhattacharya S
3. Yadav A
4. Husain F
5. Ndiaye ABKT
6. Kruppa MD
7. Hayes JJ
8. Rustchenko E
Multiple Genes of Candida albicans Influencing Echinocandin Susceptibility in Caspofungin-Adapted Mutants.; Antimicrobial agents and chemotherapy. 2022 Jan 10.
1. Poulet A
2. Mishra LN
3. Téletchéa S
4. Hayes JJ
5. Jacob Y
6. Thiriet C
7. Duc C
Identification and characterization of histones in Physarum polycephalum evidence a phylogenetic vicinity of Mycetozoans to the animal kingdom.; NAR genomics and bioinformatics; Vol 3(4). 2021 Dec.
1. Hao F
2. Kale S
3. Dimitrov S
4. Hayes JJ
Unraveling linker histone interactions in nucleosomes.; Current opinion in structural biology; Vol 71. 2021 Jul 08.
1. Sah SK
2. Hayes JJ
3. Rustchenko E
The role of aneuploidy in the emergence of echinocandin resistance in human fungal pathogen Candida albicans.; PLoS pathogens; Vol 17(5). 2021 May.
1. Marr LT
2. Ocampo J
3. Clark DJ
4. Hayes JJ
Global histone protein surface accessibility in yeast indicates a uniformly loosely packed genome with canonical nucleosomes.; Epigenetics & chromatin; Vol 14(1). 2021 Jan 11.
1. Hao F
2. Murphy KJ
3. Kujirai T
4. Kamo N
5. Kato J
6. Koyama M
7. Okamato A
8. Hayashi G
9. Kurumizaka H
10. Hayes JJ
Acetylation-modulated communication between the H3 N-terminal tail domain and the intrinsically disordered H1 C-terminal domain.; Nucleic acids research. 2020 Oct 30.
1. Jalil SA
2. Akram M
3. Bhat JA
4. Hayes JJ
5. Singh SC
6. ElKabbash M
7. Guo C
Creating superhydrophobic and antibacterial surfaces on gold by femtosecond laser pulses.; Applied surface science; Vol 506. 2020 Mar 15.
1. Marr L
2. Clark DJ
3. Hayes JJ
A method for assessing histone surface accessibility genome-wide.; Methods (San Diego, Calif.). 2019 Dec 09.
1. Tucker C
2. Bhattacharya S
3. Wakabayashi H
4. Bellaousov S
5. Kravets A
6. Welle SL
7. Myers J
8. Hayes JJ
9. Bulger M
10. Rustchenko E
Author Correction: Transcriptional Regulation on Aneuploid Chromosomes in Diverse Candida albicans Mutants.; Scientific reports; Vol 9(1). 2019 Jul 05.
1. Mishra LN
2. Hayes JJ
A nucleosome-free region locally abrogates histone H1-dependent restriction of linker DNA accessibility in chromatin.; The Journal of biological chemistry; Vol 293(50). 2018 Dec 14.
1. Tucker C
2. Bhattacharya S
3. Wakabayashi H
4. Bellaousov S
5. Kravets A
6. Welle SL
7. Myers J
8. Hayes JJ
9. Bulger M
10. Rustchenko E
Transcriptional Regulation on Aneuploid Chromosomes in Divers Candida albicans Mutants.; Scientific reports; Vol 8(1). 2018 Jan 26.
1. Gatchalian J
2. Wang X
3. Ikebe J
4. Cox KL
5. Tencer AH
6. Zhang Y
7. Burge NL
8. Di L
9. Gibson MD
10. Musselman CA
11. Poirier MG
12. Kono H
13. Hayes JJ
14. Kutateladze TG
Accessibility of the histone H3 tail in the nucleosome for binding of paired readers.; Nature communications; Vol 8(1). 2017 Nov 14.
1. Wakabayashi H
2. Tucker C
3. Bethlendy G
4. Kravets A
5. Welle SL
6. Bulger M
7. Hayes JJ
8. Rustchenko E
Correction to: NuA4 histone acetyltransferase activity is required for H4 acetylation on a dosage-compensated monosomic chromosome that confers resistance to fungal toxins.; Epigenetics & chromatin; Vol 10(1). 2017 Nov 07.
1. Wakabayashi H
2. Tucker C
3. Bethlendy G
4. Kravets A
5. Welle SL
6. Bulger M
7. Hayes J
8. Rustchenko E
NuA4 histone acetyltransferase activity is required for H4 acetylation on a dosage-compensated monosomic chromosome that confers resistance to fungal toxins.; Epigenetics & chromatin; Vol 10(1). 2017 Oct 23.
1. Tencer AH
2. Cox KL
3. Di L
4. Bridgers JB
5. Lyu J
6. Wang X
7. Sims JK
8. Weaver TM
9. Allen HF
10. Zhang Y
11. Gatchalian J
12. Darcy MA
13. Gibson MD
14. Ikebe J
15. Li W
16. Wade PA
17. Hayes JJ
18. Strahl BD
19. Kono H
20. Poirier MG
21. Musselman CA
22. Kutateladze TG
Covalent Modifications of Histone H3K9 Promote Binding of CHD3.; Cell reports; Vol 21(2). 2017 Oct 10.
1. Murphy KJ
2. Cutter AR
3. Fang H
4. Postnikov YV
5. Bustin M
6. Hayes JJ
HMGN1 and 2 remodel core and linker histone tail domains within chromatin.; Nucleic acids research; Vol 45(17). 2017 Sep 29.
1. Bednar J
2. Garcia-Saez I
3. Boopathi R
4. Cutter AR
5. Papai G
6. Reymer A
7. Syed SH
8. Lone IN
9. Tonchev O
10. Crucifix C
11. Menoni H
12. Papin C
13. Skoufias DA
14. Kurumizaka H
15. Lavery R
16. Hamiche A
17. Hayes JJ
18. Schultz P
19. Angelov D
20. Petosa C
21. Dimitrov S
Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.; Molecular cell; Vol 66(5). 2017 Jun 01.
1. Bednar J
2. Garcia-Saez I
3. Boopathi R
4. Cutter AR
5. Papai G
6. Reymer A
7. Syed SH
8. Lone IN
9. Tonchev O
10. Crucifix C
11. Menoni H
12. Papin C
13. Skoufias DA
14. Kurumizaka H
15. Lavery R
16. Hamiche A
17. Hayes JJ
18. Schultz P
19. Angelov D
20. Petosa C
21. Dimitrov S
Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.; Molecular cell; Vol 66(3). 2017 May 04.
1. Cutter AR
2. Hayes JJ
Linker histones: novel insights into structure-specific recognition of the nucleosome.; Biochemistry and cell biology = Biochimie et biologie cellulaire; Vol 95(2). 2017 Apr.
1. Balliano A
2. Hao F
3. Njeri C
4. Balakrishnan L
5. Hayes JJ
HMGB1 Stimulates Activity of Polymerase β on Nucleosome Substrates.; Biochemistry. 2017 Jan 18.
1. Fang H
2. Wei S
3. Lee TH
4. Hayes JJ
Chromatin structure-dependent conformations of the H1 CTD.; Nucleic acids research; Vol 44(19). 2016 Nov 02.
1. Mishra LN
2. Pepenella S
3. Rogge R
4. Hansen JC
5. Hayes JJ
Acetylation Mimics Within a Single Nucleosome Alter Local DNA Accessibility In Compacted Nucleosome Arrays.; Scientific reports; Vol 6. 2016 Oct 06.
1. Black PJ
2. Miller AS
3. Hayes JJ
Radioresistance of GGG sequences to prompt strand break formation from direct-type radiation damage.; Radiation and environmental biophysics. 2016 Jun 27.
1. Yue H
2. Fang H
3. Wei S
4. Hayes JJ
5. Lee TH
Single-Molecule Studies of the Linker Histone H1 Binding to DNA and the Nucleosome.; Biochemistry; Vol 55(14). 2016 Apr 12.
1. Balliano AJ
2. Hayes JJ
Base excision repair in chromatin: Insights from reconstituted systems.; DNA repair; Vol 36. 2015 Dec.
1. Cutter AR
2. Hayes JJ
A brief review of nucleosome structure.; FEBS letters; Vol 589(20 Pt A). 2015 Oct 7.
1. Pepenella S
2. Murphy KJ
3. Hayes JJ
A distinct switch in interactions of the histone H4 tail domain upon salt-dependent folding of nucleosome arrays.; The Journal of biological chemistry; Vol 289(39). 2014 Sep 26.
1. Pepenella S
2. Murphy KJ
3. Hayes JJ
Intra- and inter-nucleosome interactions of the core histone tail domains in higher-order chromatin structure.; Chromosoma; Vol 123(1-2). 2014 Mar.
1. Raghuram N
2. Strickfaden H
3. McDonald D
4. Williams K
5. Fang H
6. Mizzen C
7. Hayes JJ
8. Th'ng J
9. Hendzel MJ
Pin1 promotes histone H1 dephosphorylation and stabilizes its binding to chromatin.; The Journal of cell biology; Vol 203(1). 2013 Oct 14.
1. Elliott GO
2. Murphy KJ
3. Hayes JJ
4. Thiriet C
Replication-independent nucleosome exchange is enhanced by local and specific acetylation of histone H4.; Nucleic acids research; Vol 41(4). 2013 Feb 1.
1. Fang H
2. Clark DJ
3. Hayes JJ
DNA and nucleosomes direct distinct folding of a linker histone H1 C-terminal domain.; Nucleic acids research; Vol 40(4). 2012 Feb.
1. Liu N
2. Hayes JJ
Preparation of nucleosomes containing a specific H2A-H2A cross-link forming a DNA-constraining loop structure.; Methods in molecular biology (Clifton, N.J.); Vol 833. 2012.
1. Yang Z
2. Hayes JJ
The divalent cations Ca2+ and Mg2+ play specific roles in stabilizing histone-DNA interactions within nucleosomes that are partially redundant with the core histone tail domains.; Biochemistry; Vol 50(46). 2011 Nov 22.
1. Meyer S
2. Becker NB
3. Syed SH
4. Goutte-Gattat D
5. Shukla MS
6. Hayes JJ
7. Angelov D
8. Bednar J
9. Dimitrov S
10. Everaers R
From crystal and NMR structures, footprints and cryo-electron-micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem.; Nucleic acids research; Vol 39(21). 2011 Nov.
1. Liu N
2. Peterson CL
3. Hayes JJ
SWI/SNF- and RSC-catalyzed nucleosome mobilization requires internal DNA loop translocation within nucleosomes.; Molecular and cellular biology; Vol 31(20). 2011 Oct.
1. Almouzni G
2. Hayes JJ
International symposium on the physicochemical field for genetic activities. Awaji Island, Japan, January 24–26, 2011.; Nucleus (Austin, Tex.); Vol 2(4). 2011 Jul.
1. Caterino TL
2. Fang H
3. Hayes JJ
Nucleosome linker DNA contacts and induces specific folding of the intrinsically disordered H1 carboxyl-terminal domain.; Molecular and cellular biology; Vol 31(11). 2011 Jun.
1. Jagannathan I
2. Pepenella S
3. Hayes JJ
Activity of FEN1 endonuclease on nucleosome substrates is dependent upon DNA sequence but not flap orientation.; The Journal of biological chemistry; Vol 286(20). 2011 May 20.
1. Shukla MS
2. Syed SH
3. Goutte-Gattat D
4. Richard JL
5. Montel F
6. Hamiche A
7. Travers A
8. Faivre-Moskalenko C
9. Bednar J
10. Hayes JJ
11. Angelov D
12. Dimitrov S
The docking domain of histone H2A is required for H1 binding and RSC-mediated nucleosome remodeling.; Nucleic acids research; Vol 39(7). 2011 Apr.
1. Caterino TL
2. Hayes JJ
Structure of the H1 C-terminal domain and function in chromatin condensation.; Biochemistry and cell biology = Biochimie et biologie cellulaire; Vol 89(1). 2011 Feb.
1. Liu N
2. Balliano A
3. Hayes JJ
Mechanism(s) of SWI/SNF-induced nucleosome mobilization.; Chembiochem : a European journal of chemical biology; Vol 12(2). 2011 Jan 24.
1. Liu N
2. Hayes JJ
When push comes to shove: SWI/SNF uses a nucleosome to get rid of a nucleosome.; Molecular cell; Vol 38(4). 2010 May 28.