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Wismüller Lab

URMC / Labs / Wismüller Lab / Publications

    1. Wismüller A
    2. DSouza AM
    3. Abidin AZ
    4. Ali Vosoughi M
    5. Gange C
    6. Cortopassi IO
    7. Bozovic G
    8. Bankier AA
    9. Batra K
    10. Chodakiewitz Y
    11. Xi Y
    12. Whitlow CT
    13. Ponnatapura J
    14. Wendt GJ
    15. Weinberg EP
    16. Stockmaster L
    17. Shrier DA
    18. Shin MC
    19. Modi R
    20. Lo HS
    21. Kligerman S
    22. Hamid A
    23. Hahn LD
    24. Garcia GM
    25. Chung JH
    26. Altes T
    27. Abbara S
    28. Bader AS
    Early-stage COVID-19 pandemic observations on pulmonary embolism using nationwide multi-institutional data harvesting.; NPJ digital medicine; Vol 5(1), pp. 120. 2022 Aug 19.
    1. Wismüller A
    2. Dsouza AM
    3. Vosoughi MA
    4. Abidin A
    Large-scale nonlinear Granger causality for inferring directed dependence from short multivariate time-series data.; Scientific reports; Vol 11(1). 2021 Apr 09.
    1. Wismüller A
    2. Stockmaster L
    Investigating Covid-19 Pandemic-Induced Effects on Detection of Emergent Clinical Imaging Findings by Large-Scale Tracking of Utilization and Reading Results for AI-Based Image Analysis Services; Proc. of SPIE. Accepted for publication.. 2021 Jan 01.
    1. Wismüller A
    2. Vosoughi MA
    Large-scale Augmented Granger Causality (lsAGC) for Connectivity Analysis in Complex Systems: From Computer Simulations to Functional MRI (fMRI); Proc. of SPIE. Accepted for publication.. 2021 Jan 01.
    1. Wismüller A
    2. DSouza AM
    3. Vosoughi MA
    4. Abidin AZ
    Network Connectivity Analysis in Complex Systems Using Large-Scale Non-Linear Granger Causality (lsNGC); Proc. of SPIE. Accepted for publication.. 2021 Jan 01.
    1. Vosoughi MA
    2. Wismüller A
    Large-Scale Extended Granger Causality for Classification of Marijuana Users From Functional MRI; Proc. of SPIE. Accepted for publication.. 2021 Jan 01.
    1. Abidin AZ
    2. DSouza AM
    3. Schifitto G
    4. Wismüller A
    Detecting cognitive impairment in HIV-infected individuals using mutual connectivity analysis of resting state functional MRI.; Journal of neurovirology. 2020 Jan 07.
    1. Wismüller A
    2. Foxe JJ
    3. Saboksayr SS
    Large-Scale Extended Granger Causality (lsXGC) for Classication of Autism Spectrum Disorder from Resting-State Functional MRI; Proc. of SPIE; Vol 113141Y. 2020 Jan 01.
    1. Wismüller A
    2. Stockmaster L
    A Prospective Randomized Clinical Trial for Measuring Radiology Study Reporting Time on Artificial Intelligence-Based Detection of Intracranial Hemorrhage in Emergent Care Head CT; Proc. of SPIE; Vol 113170M. 2020 Jan 01.
    1. Saboksayr SS
    2. DSouza AM
    3. Foxe JJ
    4. Wismüller A
    Classification of Attention-Deficit/Hyperactivity Disorder from Resting-State Functional MRI with Mutual Connectivity Analysis; Proc. of SPIE; Vol 11317. 2020 Jan 01.
    1. Saboksayr SS
    2. Foxe JJ
    3. Wismüller A
    Attention-Deficit/Hyperactivity Disorder Prediction Using Graph Convolutional Networks; Proc. of SPIE; Vol 113141U. 2020 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Schifitto G
    4. Wismüller A
    A multivoxel pattern analysis framework with mutual connectivity analysis investigating changes in resting state connectivity in patients with HIV associated neurocognitive disorder; Magnetic Resonance Imaging; Vol 62, pp. 121-128. 2019 Jan 01.
    1. Chockanathan U
    2. DSouza AM
    3. Abidin AZ
    4. Schifitto G
    5. Wismüller A
    Automated diagnosis of HIV-associated neurocognitive disorders using large-scale Granger causality analysis of resting-state functional MRI.; Computers in biology and medicine; Vol 106. 2019 Jan 15.
    1. DSouza AM
    2. Abidin AZ
    3. Wismüller A
    Classification of autism spectrum disorder from resting-state fMRI with mutual connectivity analysis; Proc. of SPIE; Vol 109531D. 2019 Jan 01.
    1. Abidin AZ
    2. Dsouza AM
    3. Wismüller A
    Detecting connectivity changes in autism spectrum disorder using large-scale Granger causality; Proc. of SPIE; Vol 109490M. 2019 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Wismüller A
    Automated identification of thoracic pathology from chest radiographs with enhanced training pipeline; Proc. of SPIE; Vol 109503F. 2019 Jan 01.
    1. Abidin AZ
    2. Dar R
    3. D'Souza AM
    4. Lin EP
    5. Wismüller A
    Investigating a quantitative radiomics approach for brain tumor classification; Proc. of SPIE; Vol 109530B. 2019 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Schifitto G
    4. Wismüller A
    A multivoxel pattern analysis framework with mutual connectivity analysis investigating changes in resting state connectivity in patients with HIV associated neurocognitve disorder.; Magnetic resonance imaging; Vol 62. 2019 Jan.
    1. Chockanathan U
    2. DSouza AM
    3. Abidin AZ
    4. Schifitto G
    5. Wismüller A
    Automated diagnosis of HIV-associated neurocognitive disorders using large-scale Granger causality analysis of resting-state functional MRI; Computers in Biology and Medicine; Vol 106, pp. 24-30. 2019 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Chockanathan U
    4. Schifitto G
    5. Wismüller A
    Mutual connectivity analysis of resting-state functional MRI data with local models.; NeuroImage. 2018 May 16.
    1. Abidin AZ
    2. Deng B
    3. DSouza AM
    4. Nagarajan MB
    5. Coan P
    6. Wismüller A
    Deep transfer learning for characterizing chondrocyte patterns in phase contrast X-Ray computed tomography images of the human patellar cartilage.; Computers in biology and medicine; Vol 95. 2018 Apr 01.
    1. Chockanathan U
    2. DSouza AM
    3. Abidin AZ
    4. Schifitto G
    5. Wismüller A
    Identification and functional characterization of HIV-associated neurocognitive disorders with large-scale Granger causality analysis on resting-state functional MRI.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 10575. 2018 Feb.
    1. Abidin AZ
    2. DSouza AM
    3. Nagarajan MB
    4. Wang L
    5. Qiu X
    6. Schifitto G
    7. Wismüller A
    Alteration of brain network topology in HIV-associated neurocognitive disorder: A novel functional connectivity perspective; NeuroImage. Clinical; Vol 17, pp. 768-777. 2018 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Chockanathan U
    4. Leistritz L
    5. Wismüller A
    Investigating large-scale Granger causality analysis in presence of noise and varying sampling rate; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01.
    1. Chen L
    2. Wu Y
    3. DSouza AM
    4. Abidin AZ
    5. Wismüller A
    6. Xu C
    MRI tumor segmentation with densely connected 3D CNN; Proc. of SPIE - the International Society for Optical Engineering; Vol 10574. 2018 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Chockanathan U
    4. Wismüller A
    Regional autonomy changes in resting-state functional MRI in patients with HIV associated neurocognitive disorder; Proc. of SPIE - the International Society for Optical Engineering; Vol 10574. 2018 Jan 01.
    1. Abidin AZ
    2. DSouza AM
    3. Chockanathan U
    4. Schifitto G
    5. Wismüller A
    Investigating directed functional connectivity between the resting state networks of the human brain using mutual connectivity analysis; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01.
    1. Chockanathan U
    2. Abidin AZ
    3. DSouza AM
    4. Schifitto G
    5. Wismüller A
    Resilient modular small-world directed brain networks in healthy subjects with large-scale Granger causality analysis of resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01.
    1. Chockanathan U
    2. DSouza AM
    3. Abidin AZ
    4. Schifitto G
    5. Wismüller A
    Identification and functional characterization of HIV-associated neurocognitive disorders with large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10575. 2018 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Leistritz L
    4. Wismüller A
    Exploring Connectivity with Large-Scale Granger Causality on Resting-State Functional MRI.; Journal of neuroscience methods. 2017 Jun 16.
    1. Deng B
    2. Abidin AZ
    3. DSouza AM
    4. Nagarajan MB
    5. Chockanathan U
    6. Coan P
    7. Wismüller A
    Characterizing cartilage microarchitecture on phase-contrast x-ray computed tomography using deep learning with convolutional neural networks; Proc. of SPIE - the International Society for Optical Engineering; Vol 1013412. 2017 Jan 01.
    1. Abidin AZ
    2. DSouza AM
    3. Chockanathan U
    4. Inglese M
    5. Wismüller A
    Using large-scale Granger causality to study changes in brain network properties in the Clinically Isolated Syndrome (CIS) stage of multiple sclerosis; Proc. of SPIE - the International Society for Optical Engineering; Vol 10137. 2017 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Chockanathan U
    4. Leistritz L
    5. Wismüller A
    Identifying HIV associated neurocognitive disorder using large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10133. 2017 Jan 01.
    1. Abidin AZ
    2. Chockanathan U
    3. Jameson J
    4. Molthen R
    5. Wismüller A
    Classification of micro-CT images using 3D characterization of bone canal patterns in human osteogenesis imperfecta; Proc. of SPIE - the International Society for Optical Engineering; Vol 10134. 2017 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Chockanathan U
    4. Nagarajan MB
    5. Wismüller A
    Investigating changes in resting-state connectivity from functional MRI data in patients with HIV associated neurocognitive disorder using MCA and machine learning; Proc. of SPIE- the International Society for Optical Engineering; Vol 10137. 2017 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Nagarajan MB
    4. Wismüller A
    Mutual Connectivity Analysis (MCA) Using Generalized Radial Basis Function Neural Networks for Nonlinear Functional Connectivity Network Recovery in Resting-State Functional MRI.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9788. 2016 Mar 29.
    1. DSouza AM
    2. Abidin AZ
    3. Leistritz L
    4. Wismüller A
    Large-Scale Granger Causality Analysis on Resting-State Functional MRI.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9788. 2016 Mar.
    1. Abidin AZ
    2. D'Souza AM
    3. Nagarajan MB
    4. Wismüller A
    Investigating Changes in Brain Network Properties in HIV-Associated Neurocognitive Disease (HAND) using Mutual Connectivity Analysis (MCA).; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9788. 2016 Mar.
    1. Checefsky WA
    2. Abidin AZ
    3. Nagarajan MB
    4. Bauer JS
    5. Baum T
    6. Wismüller A
    Assessing vertebral fracture risk on volumetric quantitative computed tomography by geometric characterization of trabecular bone structure.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9785. 2016 Feb.
    1. D'Souza AM
    2. Abidin AZ
    3. Nagarajan MB
    4. Wismüller A
    Mutual connectivity analysis (MCA) using generalized radial basis function neural networks for nonlinear functional connectivity network recovery in resting-state functional MRI; Proc. of SPIE; Vol 9788. 2016 Jan 01.
    1. D'Souza AM
    2. Abidin AZ
    3. Leistritz L
    4. Wismüller A
    Large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE; Vol 9788. 2016 Jan 01.
    1. Abidin AZ
    2. DSouza AM
    3. Nagarajan MB
    4. Wismüller A
    Detecting altered connectivity patterns in HIV associated neurocognitive impairment using mutual connectivity analysis; Proc. of SPIE; Vol 9788. 2016 Jan 01.
    1. Abidin AZ
    2. DSouza AM
    3. Nagarajan MB
    4. Wismüller A
    Investigating changes in brain network properties in HIV-associated neurocognitive disease (HAND) using mutual connectivity analysis (MCA); Proc. of SPIE; Vol 9788. 2016 Jan 01.
    1. Checefsky WA
    2. Abidin AZ
    3. Nagarajan MB
    4. Bauer JS
    5. Baum T
    6. Wismüller A
    Assessing vertebral fracture risk on volumetric quantitative computed tomography by geometric characterization of trabecular bone structure; Proc. of SPIE; Vol 9785. 2016 Jan 01.
    1. Abidin AZ
    2. D'Souza AM
    3. Nagarajan MB
    4. Wismüller A
    Detecting Altered connectivity patterns in HIV associated neurocognitive impairment using Mutual Connectivity Analysis.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9788. 2016.
    1. Schmidt C
    2. Pester B
    3. Schmid-Hertel N
    4. Witte H
    5. Wismüller A
    6. Leistritz L
    A Multivariate Granger Causality Concept towards Full Brain Functional Connectivity.; PloS one; Vol 11(4). 2016.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Wismüller A
    Volumetric quantitative characterization of human patellar cartilage with topological and geometrical features on phase-contrast X-ray computed tomography.; Medical & biological engineering & computing; Vol 53(11). 2015 Nov.
    1. Wismüller A
    2. Wang X
    3. DSouza AM
    4. Hobbs SK
    5. Leistritz L
    6. Nagarajan MB
    Nonlinear Functional Connectivity Network Recovery in the Human Brain with Mutual Connectivity Analysis (MCA): Convergent Cross-Mapping and Non-Metric Clustering; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082124). 2015 Jan 01.
    1. Wismüller A
    2. DSouza AM
    3. Abidin AZ
    4. Wang X
    5. Hobbs SK
    6. Nagarajan MB
    Functional Connectivity Analysis in Resting State fMRI with Echo-State Networks and Non-Metric Clustering for Network Structure Recovery; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082106). 2015 Jan 01.
    1. Wismüller A
    2. DSouza AM
    3. Abidin AZ
    4. Wang X
    5. Hobbs SK
    6. Nagarajan MB
    Functional Connectivity Analysis in Resting State fMRI with Echo-State Networks and Non-Metric Clustering for Network Structure Recovery.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9417. 2015 Mar.