URMC / Labs / Arefin Lab / Publications

Publications

1. Rahimnezhad S
2. Arefin TM
3. Bai X
4. Neuberger T
5. Cortes D
Quantifying the Fascicular Changes in Recovered Achilles Tendon Patients Using Diffusion Magnetic Resonance Imaging and Tractography.; Journal of engineering and science in medical diagnostics and therapy; Vol 8(3), pp. 031006. 2024 Oct 16.
1. Lee AS
2. Arefin TM
3. Gubanova A
4. Stephen DN
5. Liu Y
6. Lao Z
7. Krishnamurthy A
8. De Marco García NV
9. Heck DH
10. Zhang J
11. Rajadhyaksha AM
12. Joyner AL
Cerebellar output neurons impair non-motor behaviors by altering development of extracerebellar connectivity.; bioRxiv : the preprint server for biology. 2024 Jul 08.
1. Islam R
2. White JD
3. Arefin TM
4. Mehta S
5. Liu X
6. Polis B
7. Giuliano L
8. Ahmed S
9. Bowers C
10. Zhang J
11. Kaffman A
Early adversity causes sex-specific deficits in perforant pathway connectivity and contextual memory in adolescent mice.; Biology of sex differences; Vol 15(1), pp. 39. 2024 May 07.
1. Ben Youss Z
2. Arefin TM
3. Qayyum S
4. Yi R
5. Zhang J
6. Zaim Wadghiri Y
7. Alon L
8. Yaghmazadeh O
Open-source versatile 3D-print animal conditioning platform design for in vivo preclinical brain imaging in awake mice and anesthetized mice and rats.; Lab animal; Vol 53(2), pp. 33-42. 2024 Jan 26.
1. Carozza S
2. Holmes J
3. Vértes PE
4. Bullmore E
5. Arefin TM
6. Pugliese A
7. Zhang J
8. Kaffman A
9. Akarca D
10. Astle DE
Early adversity changes the economic conditions of mouse structural brain network organization.; Developmental psychobiology; Vol 65(6), pp. e22405. 2023 Sep.
1. Arefin TM
2. Lee CH
3. Liang Z
4. Rallapalli H
5. Wadghiri YZ
6. Turnbull DH
7. Zhang J
Towards reliable reconstruction of the mouse brain corticothalamic connectivity using diffusion MRI.; NeuroImage; Vol 273, pp. 120111. 2023 Apr 13.
1. Liang Z
2. Arefin TM
3. Lee CH
4. Zhang J
Using mesoscopic tract-tracing data to guide the estimation of fiber orientation distributions in the mouse brain from diffusion MRI.; NeuroImage; Vol 270, pp. 119999. 2023 Mar 05.
1. Degiorgis L
2. Arefin TM
3. Ben-Hamida S
4. Noblet V
5. Antal C
6. Bienert T
7. Reisert M
8. von Elverfeldt D
9. Kieffer BL
10. Harsan LA
Translational Structural and Functional Signatures of Chronic Alcohol Effects in Mice.; Biological psychiatry; Vol 91(12), pp. 1039-1050. 2022 Feb 23.
1. Liang Z
2. Lee CH
3. Arefin TM
4. Dong Z
5. Walczak P
6. Shi SH
7. Knoll F
8. Ge Y
9. Ying L
10. Zhang J
Virtual mouse brain histology from multi-contrast MRI via deep learning.; eLife; Vol 11. 2022 Jan 28.
1. Arefin TM
2. Lee CH
3. White JD
4. Zhang J
5. Kaffman A
Macroscopic Structural and Connectome Mapping of the Mouse Brain Using Diffusion Magnetic Resonance Imaging.; Bio-protocol; Vol 11(22), pp. e4221. 2021 Nov 20.
1. White JD
2. Arefin TM
3. Pugliese A
4. Lee CH
5. Gassen J
6. Zhang J
7. Kaffman A
Early life stress causes sex-specific changes in adult fronto-limbic connectivity that differentially drive learning.; eLife; Vol 9. 2020 Dec 01.
1. Zhang C
2. Arefin TM
3. Nakarmi U
4. Lee CH
5. Li H
6. Liang D
7. Zhang J
8. Ying L
Acceleration of three-dimensional diffusion magnetic resonance imaging using a kernel low-rank compressed sensing method.; NeuroImage; Vol 210, pp. 116584. 2020 Jan 29.
1. Ben Hamida S
2. Mendonça-Netto S
3. Arefin TM
4. Nasseef MT
5. Boulos LJ
6. McNicholas M
7. Ehrlich AT
8. Clarke E
9. Moquin L
10. Gratton A
11. Darcq E
12. Harsan LA
13. Maldonado R
14. Kieffer BL
Increased Alcohol Seeking in Mice Lacking Gpr88 Involves Dysfunctional Mesocorticolimbic Networks.; Biological psychiatry; Vol 84(3), pp. 202-212. 2018 Feb 09.
1. Ehrlich AT
2. Semache M
3. Bailly J
4. Wojcik S
5. Arefin TM
6. Colley C
7. Le Gouill C
8. Gross F
9. Lukasheva V
10. Hogue M
11. Darcq E
12. Harsan LA
13. Bouvier M
14. Kieffer BL
Mapping GPR88-Venus illuminates a novel role for GPR88 in sensory processing.; Brain structure & function; Vol 223(3), pp. 1275-1296. 2017 Nov 06.
1. Arefin TM
2. Mechling AE
3. Meirsman AC
4. Bienert T
5. Hübner NS
6. Lee HL
7. Ben Hamida S
8. Ehrlich A
9. Roquet D
10. Hennig J
11. von Elverfeldt D
12. Kieffer BL
13. Harsan LA
Remodeling of Sensorimotor Brain Connectivity in Gpr88-Deficient Mice.; Brain connectivity; Vol 7(8), pp. 526-540. 2017 Oct.
1. Mechling AE
2. Arefin T
3. Lee HL
4. Bienert T
5. Reisert M
6. Ben Hamida S
7. Darcq E
8. Ehrlich A
9. Gaveriaux-Ruff C
10. Parent MJ
11. Rosa-Neto P
12. Hennig J
13. von Elverfeldt D
14. Kieffer BL
15. Harsan LA
Deletion of the mu opioid receptor gene in mice reshapes the reward-aversion connectome.; Proceedings of the National Academy of Sciences of the United States of America; Vol 113(41), pp. 11603-11608. 2016 Sep 26.