Department of Pediatrics / Mariani Lab / Publications

Publications

1. Ushakumary MG
2. Feng S
3. Bandyopadhyay G
4. Olson H
5. Weitz KK
6. Huyck HL
7. Poole C
8. Purkerson JM
9. Bhattacharya S
10. Ljungberg MC
11. Mariani TJ
12. Deutsch GH
13. Misra RS
14. Carson JP
15. Adkins JN
16. Pryhuber GS
17. Clair G
Cell Population-resolved Multi-Omics Atlas of the Developing Lung.; American journal of respiratory cell and molecular biology. 2024 Oct 24.
1. Bender W
2. Zhang Y
3. Corbett A
4. Chu C
5. Grier A
6. Wang L
7. Qiu X
8. McCall MN
9. Topham DJ
10. Walsh EE
11. Mariani TJ
12. Scheuermann R
13. Caserta MT
14. Anderson CS
Association of disease severity and genetic variation during primary Respiratory Syncytial Virus infections.; BMC medical genomics; Vol 17(1), pp. 165. 2024 Jun 19.
1. Bandyopadhyay G
2. Jehrio MG
3. Baker C
4. Bhattacharya S
5. Misra RS
6. Huyck HL
7. Chu CY
8. Myers JR
9. Ashton J
10. Polter S
11. Cochran M
12. Bushnell T
13. Dutra J
14. Katzman PJ
15. Deutsch GH
16. Mariani TJ
17. Pryhuber GS
Bulk RNA Sequencing of Human Pediatric Lung Cell Populations Reveals Unique Transcriptomic Signature Associated with Post-natal Pulmonary Development.; American journal of physiology. Lung cellular and molecular physiology. 2024 Mar 05.
1. Bhattacharya S
2. Myers JA
3. Baker C
4. Guo M
5. Danopoulos S
6. Myers JR
7. Bandyopadhyay G
8. Romas ST
9. Huyck HL
10. Misra RS
11. Dutra J
12. Holden-Wiltse J
13. McDavid AN
14. Ashton JM
15. Al Alam D
16. Potter SS
17. Whitsett JA
18. Xu Y
19. Pryhuber GS
20. Mariani TJ
Single-Cell Transcriptomic Profiling Identifies Molecular Phenotypes of Newborn Human Lung Cells.; Genes; Vol 15(3). 2024 Feb 26.
1. Moore BB
2. Ballinger MN
3. Bauer NN
4. Blackwell TS
5. Borok Z
6. Budinger GRS
7. Camoretti-Mercado B
8. Erzurum SC
9. Himes BE
10. Keshamouni VG
11. Kulkarni HS
12. Mallampalli RK
13. Mariani TJ
14. Martinez FJ
15. McCombs JE
16. Newcomb DC
17. Johnston RA
18. O'Reilly MA
19. Prakash YS
20. Ridge KM
21. Sime PJ
22. Sperling AI
23. Violette S
24. Wilkes DS
25. Königshoff M
Building Career Paths for Ph.D., Basic and Translational Scientists in Clinical Departments in the United States: An Official American Thoracic Society Workshop Report.; Annals of the American Thoracic Society; Vol 20(8), pp. 1077-1087. 2023 Aug.
1. Dylag AM
2. Misra RS
3. Bandyopadhyay G
4. Poole C
5. Huyck HL
6. Jehrio MG
7. Haak J
8. Deutsch GH
9. Dvorak C
10. Olson HM
11. Paurus V
12. Katzman P
13. Woo J
14. Purkerson JM
15. Adkins JN
16. Mariani TJ
17. Clair GC
18. Pryhuber GS
New Insights into the Natural History of Bronchopulmonary Dysplasia from Proteomics and Multiplexed Immunohistochemistry.; American journal of physiology. Lung cellular and molecular physiology. 2023 Jul 25.
1. Zhou T
2. Gilliam NJ
3. Li S
4. Spandau S
5. Osborn RM
6. Connor S
7. Anderson CS
8. Mariani TJ
9. Thakar J
10. Dewhurst S
11. Mathews DH
12. Huang L
13. Sun Y
Generation and Functional Analysis of Defective Viral Genomes during SARS-CoV-2 Infection.; mBio. 2023 Apr 19.
1. Bhattacharya S
2. Cherry C
3. Deutsch G
4. Glass IA
5. Mariani TJ
6. Alam DA
7. Danopoulos S
A Trisomy 21 Lung Cell Atlas.; bioRxiv : the preprint server for biology. 2023 Apr 03.
1. Osborn RM
2. Leach J
3. Zanche M
4. Ashton JM
5. Chu C
6. Thakar J
7. Dewhurst S
8. Rosenberger S
9. Pavelka M
10. Pryhuber GS
11. Mariani TJ
12. Anderson CS
Preparation of noninfectious scRNAseq samples from SARS-CoV-2-infected epithelial cells.; PloS one; Vol 18(2), pp. e0281898. 2023 Feb 24.
1. Chu CY
2. Kim SY
3. Pryhuber GS
4. Mariani TJ
5. McGraw MD
Single Cell Resolution of Human Airway Epithelial Cells Exposed to Bronchiolitis Obliterans - Associated Chemicals.; American journal of physiology. Lung cellular and molecular physiology. 2023 Jan 12.
1. Wang S
2. Zhu G
3. Jiang D
4. Rhen J
5. Li X
6. Liu H
7. Lyu Y
8. Tsai P
9. Rose Y
10. Nguyen T
11. White RJ
12. Pryhuber GS
13. Mariani TJ
14. Li C
15. Mohan A
16. Xu Y
17. Pang J
Reduced Notch1 Cleavage Promotes the Development of Pulmonary Hypertension.; Hypertension; Vol 79(1), pp. 79-92. 2022 Jan 01.
1. Yu J
2. Tycksen E
3. Yang W
4. Mariani TJ
5. Bhattacharya S
6. Falsey AR
7. Topham DJ
8. Storch GA
Use of Host Response to Refine the Diagnosis of Group A Streptococcal Pharyngitis.; Journal of the Pediatric Infectious Diseases Society. 2022 Sep 25.
1. Zhou T
2. Gilliam NJ
3. Li S
4. Spaudau S
5. Osborn RM
6. Anderson CS
7. Mariani TJ
8. Thakar J
9. Dewhurst S
10. Mathews DH
11. Huang L
12. Sun Y
Generation and functional analysis of defective viral genomes during SARS-CoV-2 infection.; bioRxiv : the preprint server for biology. 2022 Sep 23.
1. McCall MN
2. Chu CY
3. Wang L
4. Benoodt L
5. Thakar J
6. Corbett A
7. Holden-Wiltse J
8. Slaunwhite C
9. Grier A
10. Gill SR
11. Falsey AR
12. Topham DJ
13. Caserta MT
14. Walsh EE
15. Qiu X
16. Mariani TJ
A systems genomics approach uncovers molecular associates of RSV severity.; PLoS computational biology; Vol 17(12). 2021 Dec 28.
1. Peterson DR
2. Baran AM
3. Bhattacharya S
4. Branche AR
5. Croft DP
6. Corbett AM
7. Walsh EE
8. Falsey AR
9. Mariani TJ
Gene Expression Risk Scores for COVID-19 Illness Severity.; The Journal of infectious diseases. 2021 Nov 30.
1. Clair G
2. Bramer LM
3. Misra R
4. McGraw MD
5. Bhattacharya S
6. Kitzmiller JA
7. Feng S
8. Danna VG
9. Bandyopadhyay G
10. Bhotika H
11. Huyck HL
12. Deutsch GH
13. Mariani TJ
14. Carson J
15. Whitsett JA
16. Pryhuber GS
17. Adkins JN
18. Ansong C
Proteomic Analysis of Human Lung Development.; American journal of respiratory and critical care medicine. 2021 Nov 09.
1. Wang S
2. Zhu G
3. Jiang D
4. Rhen J
5. Li X
6. Liu H
7. Lyu Y
8. Tsai P
9. Rose Y
10. Nguyen T
11. White RJ
12. Pryhuber GS
13. Mariani TJ
14. Li C
15. Mohan A
16. Xu Y
17. Pang J
Reduced Notch1 Cleavage Promotes the Development of Pulmonary Hypertension.; Hypertension (Dallas, Tex. : 1979). 2021 Nov 05.
1. Croft DP
2. Burton DS
3. Nagel DJ
4. Bhattacharya S
5. Falsey AR
6. Georas SN
7. Hopke PK
8. Johnston CJ
9. Kottmann RM
10. Litonjua AA
11. Mariani TJ
12. Rich DQ
13. Thevenet-Morrison K
14. Thurston SW
15. Utell MJ
16. McCall MN
The effect of air pollution on the transcriptomics of the immune response to respiratory infection.; Scientific reports; Vol 11(1). 2021 Sep 30.
1. Danopoulos S
2. Deutsch GH
3. Dumortier C
4. Mariani TJ
5. Al Alam D
Lung disease manifestations in Down Syndrome.; American journal of physiology. Lung cellular and molecular physiology. 2021 Sep 01.
1. Peterson DR
2. Baran AM
3. Bhattacharya S
4. Branche AR
5. Croft DP
6. Corbett AM
7. Walsh EE
8. Falsey AR
9. Mariani TJ
Gene Expression Risk Scores for COVID-19 Illness Severity.; bioRxiv : the preprint server for biology. 2021 Aug 24.
1. Mereness JA
2. Mariani TJ
The critical role of collagen VI in lung development and chronic lung disease.; Matrix biology plus; Vol 10. 2021 Jun.
1. Danopoulos S
2. Bhattacharya S
3. Deutsch G
4. Nih LR
5. Slaunwhite C
6. Mariani TJ
7. Al Alam D
Prenatal histological, cellular, and molecular anomalies in Trisomy 21 lung.; The Journal of pathology. 2021 May 29.
1. Wang J
2. Kim SY
3. House E
4. Olson HM
5. Johnston CJ
6. Chalupa D
7. Hernady E
8. Mariani TJ
9. Clair G
10. Ansong C
11. Qian WJ
12. Finkelstein JN
13. McGraw MD
Repetitive diacetyl vapor exposure promotes ubiquitin proteasome stress and precedes bronchiolitis obliterans pathology.; Archives of toxicology. 2021 May 24.
1. Meng Y
2. Groth SW
3. Hodgkinson CA
4. Mariani TJ
Serotonin system genes contribute to the susceptibility to obesity in Black adolescents.; Obesity science & practice; Vol 7(4), pp. 441-449. 2021 Mar 27.
1. Anderson CS
2. Chirkova T
3. Slaunwhite CG
4. Qiu X
5. Walsh EE
6. Anderson LJ
7. Mariani TJ
CX3CR1 Engagement by Respiratory Syncytial Virus Leads to Induction of Nucleolin and Dysregulation of Cilia-related Genes.; Journal of virology. 2021 Mar 17.
1. Muus C
2. Luecken MD
3. Eraslan G
4. Sikkema L
5. Waghray A
6. Heimberg G
7. Kobayashi Y
8. Vaishnav ED
9. Subramanian A
10. Smillie C
11. Jagadeesh KA
12. Duong ET
13. Fiskin E
14. Triglia ET
15. Ansari M
16. Cai P
17. Lin B
18. Buchanan J
19. Chen S
20. Shu J
21. Haber AL
22. Chung H
23. Montoro DT
24. Adams T
25. Aliee H
26. Allon SJ
27. Andrusivova Z
28. Angelidis I
29. Ashenberg O
30. Bassler K
31. Bécavin C
32. Benhar I
33. Bergenstråhle J
34. Bergenstråhle L
35. Bolt L
36. Braun E
37. Bui LT
38. Callori S
39. Chaffin M
40. Chichelnitskiy E
41. Chiou J
42. Conlon TM
43. Cuoco MS
44. Cuomo ASE
45. Deprez M
46. Duclos G
47. Fine D
48. Fischer DS
49. Ghazanfar S
50. Gillich A
51. Giotti B
52. Gould J
53. Guo M
54. Gutierrez AJ
55. Habermann AC
56. Harvey T
57. He P
58. Hou X
59. Hu L
60. Hu Y
61. Jaiswal A
62. Ji L
63. Jiang P
64. Kapellos TS
65. Kuo CS
66. Larsson L
67. Leney-Greene MA
68. Lim K
69. Litviňuková M
70. Ludwig LS
71. Lukassen S
72. Luo W
73. Maatz H
74. Madissoon E
75. Mamanova L
76. Manakongtreecheep K
77. Leroy S
78. Mayr CH
79. Mbano IM
80. McAdams AM
81. Nabhan AN
82. Nyquist SK
83. Penland L
84. Poirion OB
85. Poli S
86. Qi C
87. Queen R
88. Reichart D
89. Rosas I
90. Schupp JC
91. Shea CV
92. Shi X
93. Sinha R
94. Sit RV
95. Slowikowski K
96. Slyper M
97. Smith NP
98. Sountoulidis A
99. Strunz M
100. Sullivan TB
101. Sun D
102. Talavera-López C
103. Tan P
104. Tantivit J
105. Travaglini KJ
106. Tucker NR
107. Vernon KA
108. Wadsworth MH
109. Waldman J
110. Wang X
111. Xu K
112. Yan W
113. Zhao W
114. Ziegler CGK
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics.; Nature medicine. 2021 Mar 02.
1. Wang L
2. Chu CY
3. McCall MN
4. Slaunwhite C
5. Holden-Wiltse J
6. Corbett A
7. Falsey AR
8. Topham DJ
9. Caserta MT
10. Mariani TJ
11. Walsh EE
12. Qiu X
Airway gene-expression classifiers for respiratory syncytial virus (RSV) disease severity in infants.; BMC medical genomics; Vol 14(1). 2021 Feb 25.
1. Al Alam D
2. Ballard PL
3. Jourdan Le Saux C
4. Ingram JL
5. Mariani TJ
6. Moore NS
7. Weiss DJ
8. Yu M
Human Fetal Tissue Regulation. Impact on Pediatric and Adult Respiratory-related Research.; Annals of the American Thoracic Society; Vol 18(2). 2021 Feb.
1. Grier A
2. Gill AL
3. Kessler HA
4. Corbett A
5. Bandyopadhyay S
6. Java J
7. Holden-Wiltse J
8. Falsey AR
9. Topham DJ
10. Mariani TJ
11. Caserta MT
12. Walsh EE
13. Gill SR
Temporal Dysbiosis of Infant Nasal Microbiota Relative to Respiratory Syncytial Virus Infection.; The Journal of infectious diseases. 2020 Sep 14.
1. Chu CY
2. Qiu X
3. McCall MN
4. Wang L
5. Corbett A
6. Holden-Wiltse J
7. Slaunwhite C
8. Grier A
9. Gill SR
10. Pryhuber GS
11. Falsey AR
12. Topham DJ
13. Caserta MT
14. Walsh EE
15. Mariani TJ
Airway gene expression correlates of RSV disease severity and microbiome composition in infants.; The Journal of infectious diseases. 2020 Sep 14.
1. Thakar J
2. Qian Y
3. Benoodt L
4. Roumanes D
5. Qiu X
6. Laniewski N
7. Chu C
8. Slaunwhite C
9. Wang L
10. Mandava A
11. Chang I
12. Falsey AR
13. Caserta MT
14. Mariani TJ
15. Scheuermann RH
16. Walsh EE
17. Topham DJ
Unbiased analysis of peripheral blood mononuclear cells reveals CD4 T cell response to RSV matrix protein.; Vaccine: X; Vol 5. 2020 Aug 07.
1. Anderson CS
2. Sangster MY
3. Yang H
4. Mariani TJ
5. Chaudhury S
6. Topham DJ
Implementing sequence-based antigenic distance calculation into immunological shape space model.; BMC bioinformatics; Vol 21(1). 2020 Jun 19.
1. McGraw MD
2. Kim SY
3. Reed C
4. Hernady E
5. Rahman I
6. Mariani TJ
7. Finkelstein JN
Airway basal cell injury after acute diacetyl (2,3-butanedione) vapor exposure.; Toxicology letters; Vol 325. 2020 Jun 01.
1. Ren Y
2. Lyu Y
3. Mereness JA
4. Wang S
5. Pang J
6. Mariani TJ
Rare Pulmonary Connective Tissue Type Mast Cells Regulate Lung Endothelial Cell Angiogenesis.; The American journal of pathology. 2020 May 22.
1. Bhattacharya S
2. Mereness JA
3. Baran AM
4. Misra RS
5. Peterson DR
6. Ryan RM
7. Reynolds AM
8. Pryhuber GS
9. Mariani TJ
Lymphocyte-Specific Biomarkers Associated With Preterm Birth and Bronchopulmonary Dysplasia.; Frontiers in immunology; Vol 11. 2020.
1. Mereness JA
2. Bhattacharya S
3. Ren Y
4. Wang Q
5. Anderson CS
6. Donlon K
7. Dylag AM
8. Haak J
9. Angelin A
10. Bonaldo P
11. Mariani T
Collagen VI Deficiency Results in Structural Abnormalities in the Mouse Lung.; The American journal of pathology. 2019 Dec 12.
1. Anderson CS
2. Chu CY
3. Wang Q
4. Mereness JA
5. Ren Y
6. Donlon K
7. Bhattacharya S
8. Misra RS
9. Walsh EE
10. Pryhuber GS
11. Mariani TJ
CX3CR1 as a respiratory syncytial virus receptor in pediatric human lung.; Pediatric research. 2019 Nov 14.
1. Danopoulos S
2. Bhattacharya S
3. Mariani TJ
4. Al Alam D
Transcriptional Characterisation of Human Lung Cells Identifies Novel Mesenchymal Lineage Markers.; The European respiratory journal. 2019 Oct 16.
1. Sonawane AR
2. Tian L
3. Chu CY
4. Qiu X
5. Wang L
6. Holden-Wiltse J
7. Grier A
8. Gill SR
9. Caserta MT
10. Falsey AR
11. Topham DJ
12. Walsh EE
13. Mariani TJ
14. Weiss ST
15. Silverman EK
16. Glass K
17. Liu YY
Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection.; Scientific reports; Vol 9(1). 2019 Sep 25.
1. Ha B
2. Chirkova T
3. Boukhvalova MS
4. Sun HY
5. Walsh EE
6. Anderson CS
7. Mariani TJ
8. Anderson LJ
Mutation of Respiratory Syncytial Virus G Protein's CX3C Motif Attenuates Infection in Cotton Rats and Primary Human Airway Epithelial Cells.; Vaccines; Vol 7(3). 2019 Jul 19.
1. Du Y
2. Clair GC
3. Al Alam D
4. Danopoulos S
5. Schnell D
6. Kitzmiller JA
7. Misra RS
8. Bhattacharya S
9. Warburton D
10. Mariani TJ
11. Pryhuber GS
12. Whitsett JA
13. Ansong C
14. Xu Y
Integration of transcriptomic and proteomic data identifies biological functions in cell populations from human infant lung.; American journal of physiology. Lung cellular and molecular physiology. 2019 Jul 03.
1. Walsh EE
2. Mariani TJ
3. Chu C
4. Grier A
5. Gill SR
6. Qiu X
7. Wang L
8. Holden-Wiltse J
9. Corbett A
10. Thakar J
11. Benoodt L
12. McCall MN
13. Topham DJ
14. Falsey AR
15. Caserta MT
Aims, Study Design, and Enrollment Results From the Assessing Predictors of Infant Respiratory Syncytial Virus Effects and Severity Study.; JMIR research protocols; Vol 8(6). 2019 Jun 06.
1. Wang Q
2. Bhattacharya S
3. Mereness JA
4. Anderson C
5. Lillis JA
6. Misra RS
7. Romas S
8. Huyck H
9. Howell A
10. Bandyopadhyay G
11. Donlon K
12. Myers JR
13. Ashton J
14. Pryhuber GS
15. Mariani TJ
A novel in vitro model of primary human pediatric lung epithelial cells.; Pediatric research. 2019 Feb 18.
1. Pan H
2. Deutsch GH
3. Wert SE
Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung.; Journal of biomedical semantics; Vol 10(1). 2019 Jan 24.
1. Ryan RM
2. Feng R
3. Bazacliu C
4. Ferkol TW
5. Ren CL
6. Mariani TJ
7. Poindexter BB
8. Wang F
9. Moore PE
Black Race Is Associated with a Lower Risk of Bronchopulmonary Dysplasia.; The Journal of pediatrics. 2019 Jan 04.
1. Hamvas A
2. Feng R
3. Bi Y
4. Wang F
5. Bhattacharya S
6. Mereness J
7. Kaushal M
8. Cotten CM
9. Ballard PL
10. Mariani TJ
Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth.; BMC genetics; Vol 19(1). 2018 Oct 20.
1. Yu J
2. Peterson DR
3. Baran AM
4. Bhattacharya S
5. Wylie TN
6. Falsey AR
7. Mariani TJ
8. Storch GA
Host Gene Expression in Nose and Blood for the Diagnosis of Viral Respiratory Infection.; The Journal of infectious diseases. 2018 Oct 18.
1. Kyle JE
2. Clair G
3. Bandyopadhyay G
4. Misra RS
5. Zink EM
6. Bloodsworth KJ
7. Shukla AK
8. Du Y
9. Lillis J
10. Myers JR
11. Ashton J
12. Bushnell T
13. Cochran M
14. Deutsch G
15. Baker ES
16. Carson JP
17. Mariani TJ
18. Xu Y
19. Whitsett JA
20. Pryhuber G
21. Ansong C
Cell type-resolved human lung lipidome reveals cellular cooperation in lung function.; Scientific reports; Vol 8(1). 2018 Sep 07.
1. Bandyopadhyay G
2. Huyck HL
3. Misra RS
4. Bhattacharya S
5. Wang Q
6. Mereness J
7. Lillis JA
8. Myers JR
9. Ashton J
10. Bushnell T
11. Cochran M
12. Holden-Wiltse J
13. Katzman P
14. Deutsch GH
15. Whitsett JA
16. Xu Y
17. Mariani TJ
18. Pryhuber GS
Dissociation, Cellular Isolation and Initial Molecular Characterization of Neonatal and Pediatric Human Lung Tissues.; American journal of physiology. Lung cellular and molecular physiology. 2018 Jul 05.
1. Walsh EE
2. Wang L
3. Falsey AR
4. Qiu X
5. Corbett A
6. Holden-Wiltse J
7. Mariani TJ
8. Topham DJ
9. Caserta MT
Virus-Specific Antibody, Viral Load, and Disease Severity in Respiratory Syncytial Virus Infection.; The Journal of infectious diseases; Vol 218(2). 2018 Jun 20.
1. Scheible KM
2. Emo J
3. Laniewski N
4. Baran AM
5. Peterson DR
6. Holden-Wiltse J
7. Bandyopadhyay S
8. Straw AG
9. Huyck H
10. Ashton JM
11. Tripi KS
12. Arul K
13. Werner E
14. Scalise T
15. Maffett D
16. Caserta M
17. Ryan RM
18. Reynolds AM
19. Ren CL
20. Topham DJ
21. Mariani TJ
22. Pryhuber GS
T cell developmental arrest in former premature infants increases risk of respiratory morbidity later in infancy.; JCI insight; Vol 3(4). 2018 Feb 22.
1. Karnati S
2. Oruqaj G
3. Janga H
4. Tumpara S
5. Colasante C
6. Van Veldhoven PP
7. Braverman N
8. Pilatz A
9. Mariani TJ
10. Baumgart-Vogt E
PPARα-mediated peroxisome induction compensates PPARγ-deficiency in bronchiolar club cells.; PloS one; Vol 13(9). 2018.
1. Mereness JA
2. Bhattacharya S
3. Wang Q
4. Ren Y
5. Pryhuber GS
6. Mariani TJ
Type VI collagen promotes lung epithelial cell spreading and wound-closure.; PloS one; Vol 13(12). 2018.
1. Grier A
2. Qiu X
3. Bandyopadhyay S
4. Holden-Wiltse J
5. Kessler HA
6. Gill AL
7. Hamilton B
8. Huyck H
9. Misra S
10. Mariani TJ
11. Ryan RM
12. Scholer L
13. Scheible KM
14. Lee YH
15. Caserta MT
16. Pryhuber GS
17. Gill SR
Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth.; Microbiome; Vol 5(1). 2017 Dec 11.
1. Mariani TJ
2. Qiu X
3. Chu CY
4. Wang L
5. Thakar J
6. Holden-Wiltse J
7. Corbett A
8. Topham DJ
9. Falsey AR
10. Caserta MT
11. Walsh EE
Dynamic changes in the CD4 T cell transcriptome are associated with disease severity during primary RSV infection in young infants.; The Journal of infectious diseases. 2017 Aug 17.
1. Ardini-Poleske ME
2. Clark RF
3. Ansong C
4. Carson JP
5. Corley RA
6. Deutsch GH
7. Hagood JS
8. Kaminski N
9. Mariani TJ
10. Potter SS
11. Pryhuber GS
12. Warburton D
13. Whitsett JA
14. Palmer SM
15. Ambalavanan N
16. LungMAP Consortium T
LungMAP: The Molecular Atlas of Lung Development Program.; American journal of physiology. Lung cellular and molecular physiology. 2017 Aug 10.
1. Bhattacharya S
2. Rosenberg AF
3. Peterson DR
4. Grzesik K
5. Baran AM
6. Ashton JM
7. Gill SR
8. Corbett AM
9. Holden-Wiltse J
10. Topham DJ
11. Walsh EE
12. Mariani TJ
13. Falsey AR
Transcriptomic Biomarkers to Discriminate Bacterial from Nonbacterial Infection in Adults Hospitalized with Respiratory Illness.; Scientific reports; Vol 7(1). 2017 Jul 26.
1. Solleti SK
2. Bhattacharya S
3. Ahmad A
4. Wang Q
5. Mereness J
6. Rangasamy T
7. Mariani TJ
MicroRNA expression profiling defines the impact of electronic cigarettes on human airway epithelial cells.; Scientific reports; Vol 7(1). 2017 Apr 24.
1. Du Y
2. Kitzmiller JA
3. Sridharan A
4. Perl AK
5. Bridges JP
6. Misra RS
7. Pryhuber GS
8. Mariani TJ
9. Bhattacharya S
10. Guo M
11. Potter SS
12. Dexheimer P
13. Aronow B
14. Jobe AH
15. Whitsett JA
16. Xu Y
Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development.; Thorax. 2017 Jan 09.
1. Misra RS
2. Bhattacharya S
3. Huyck HL
4. Wang JE
5. Slaunwhite CG
6. Slaunwhite SL
7. Wightman TR
8. Secor-Socha S
9. Misra SK
10. Bushnell TP
11. Reynolds AM
12. Ryan RM
13. Quataert SA
14. Pryhuber GS
15. Mariani TJ
Flow-based sorting of neonatal lymphocyte populations for transcriptomics analysis.; Journal of immunological methods. 2016 Jul 18.
1. Karnati S
2. Graulich T
3. Oruqaj G
4. Pfreimer S
5. Seimetz M
6. Stamme C
7. Mariani TJ
8. Weissmann N
9. Mühlfeld C
10. Baumgart-Vogt E
Postnatal development of the bronchiolar club cells of distal airways in the mouse lung: stereological and molecular biological studies.; Cell and tissue research; Vol 364(3). 2016 Jun.
1. Yee M
2. Gelein R
3. Mariani TJ
4. Lawrence BP
5. O'Reilly MA
The Oxygen Environment at Birth Specifies the Population of Alveolar Epithelial Stem Cells in the Adult Lung.; Stem cells (Dayton, Ohio); Vol 34(5). 2016 May.
1. Solleti SK
2. Srisuma S
3. Bhattacharya S
4. Rangel-Moreno J
5. Bijli KM
6. Randall TD
7. Rahman A
8. Mariani TJ
Serpine2 deficiency results in lung lymphocyte accumulation and bronchus-associated lymphoid tissue formation.; FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 2016 Apr 8.
1. Mariani TJ
Respiratory disorders: Ironing out smoking-related airway disease.; Nature; Vol 531(7596). 2016 Mar 31.
1. Ahmad A
2. Bhattacharya S
3. Sridhar A
4. Iqbal AM
5. Mariani TJ
Recurrent copy number variants associated with bronchopulmonary dysplasia.; Pediatric research. 2016 Mar 14.
1. Chu CY
2. Qiu X
3. Wang L
4. Bhattacharya S
5. Lofthus G
6. Corbett A
7. Holden-Wiltse J
8. Grier A
9. Tesini B
10. Gill SR
11. Falsey AR
12. Caserta MT
13. Walsh EE
14. Mariani TJ
The Healthy Infant Nasal Transcriptome: A Benchmark Study.; Scientific reports; Vol 6. 2016.
1. Mariani TJ
Update on Molecular Biology of Lung Development--Transcriptomics.; Clinics in perinatology; Vol 42(4). 2015 Dec.
1. Scheible KM
2. Emo J
3. Yang H
4. Holden-Wiltse J
5. Straw A
6. Huyck H
7. Misra S
8. Topham DJ
9. Ryan RM
10. Reynolds AM
11. Mariani TJ
12. Pryhuber GS
Developmentally determined reduction in CD31 during gestation is associated with CD8+ T cell effector differentiation in preterm infants.; Clinical immunology (Orlando, Fla.); Vol 161(2). 2015 Dec.
1. Legoux FP
2. Lim JB
3. Cauley AW
4. Dikiy S
5. Ertelt J
6. Mariani TJ
7. Sparwasser T
8. Way SS
9. Moon JJ
CD4+ T Cell Tolerance to Tissue-Restricted Self Antigens Is Mediated by Antigen-Specific Regulatory T Cells Rather Than Deletion.; Immunity; Vol 43(5). 2015 Nov 17.
1. Solleti SK
2. Simon DM
3. Srisuma S
4. Arikan MC
5. Bhattacharya S
6. Rangasamy T
7. Bijli KM
8. Rahman A
9. Crossno JT
10. Shapiro SD
11. Mariani TJ
Airway epithelial cell PPARγ modulates cigarette smoke-induced chemokine expression and emphysema susceptibility in mice.; American journal of physiology. Lung cellular and molecular physiology; Vol 309(3). 2015 Aug 1.
1. Cuna A
2. Halloran B
3. Faye-Petersen O
4. Kelly D
5. Crossman DK
6. Cui X
7. Pandit K
8. Kaminski N
9. Bhattacharya S
10. Ahmad A
11. Mariani TJ
12. Ambalavanan N
Alterations in gene expression and DNA methylation during murine and human lung alveolar septation.; American journal of respiratory cell and molecular biology; Vol 53(1). 2015 Jul.
1. Misra R
2. Shah S
3. Fowell D
4. Wang H
5. Scheible K
6. Misra S
7. Huyck H
8. Wyman C
9. Ryan RM
10. Reynolds AM
11. Mariani T
12. Katzman PJ
13. Pryhuber GS
Preterm cord blood CD4⁺ T cells exhibit increased IL-6 production in chorioamnionitis and decreased CD4⁺ T cells in bronchopulmonary dysplasia.; Human immunology; Vol 76(5). 2015 May.
1. Ambalavanan N
2. Cotten CM
3. Page GP
4. Carlo WA
5. Murray JC
6. Bhattacharya S
7. Mariani TJ
8. Cuna AC
9. Faye-Petersen OM
10. Kelly D
11. Higgins RD
Integrated genomic analyses in bronchopulmonary dysplasia.; The Journal of pediatrics; Vol 166(3). 2015 Mar.
1. Pryhuber GS
2. Maitre NL
3. Ballard RA
4. Cifelli D
5. Davis SD
6. Ellenberg JH
7. Greenberg JM
8. Kemp J
9. Mariani TJ
10. Panitch H
11. Ren C
12. Shaw P
13. Taussig LM
14. Hamvas A
Prematurity and respiratory outcomes program (PROP): study protocol of a prospective multicenter study of respiratory outcomes of preterm infants in the United States.; BMC pediatrics; Vol 15. 2015.
1. Bhattacharya S
2. Zhou Z
3. Yee M
4. Chu CY
5. Lopez AM
6. Lunger VA
7. Solleti SK
8. Resseguie E
9. Buczynski B
10. Mariani TJ
11. O'Reilly MA
The genome-wide transcriptional response to neonatal hyperoxia identifies Ahr as a key regulator.; American journal of physiology. Lung cellular and molecular physiology; Vol 307(7). 2014 Oct 01.
1. Qiu W
2. Rogers AJ
3. Damask A
4. Raby BA
5. Klanderman BJ
6. Duan QL
7. Tyagi S
8. Niu S
9. Anderson C
10. Cahir-Mcfarland E
11. Mariani TJ
12. Carey V
13. Tantisira KG
Pharmacogenomics: novel loci identification via integrating gene differential analysis and eQTL analysis.; Human molecular genetics; Vol 23(18). 2014 Sep 15.
1. Eckle T
2. Brodsky K
3. Bonney M
4. Packard T
5. Han J
6. Borchers CH
7. Mariani TJ
8. Kominsky DJ
9. Mittelbronn M
10. Eltzschig HK
HIF1A reduces acute lung injury by optimizing carbohydrate metabolism in the alveolar epithelium.; PLoS biology; Vol 11(9). 2013 Sep.
1. Mariani TJ
2. Martinez F
Chronic obstructive pulmonary disease genomics: yesterday, discovering population biomarkers; tomorrow, defining disease clusters.; American journal of respiratory and critical care medicine; Vol 187(9). 2013 May 1.
1. Bhattacharya S
2. Mariani TJ
Systems biology approaches to identify developmental bases for lung diseases.; Pediatric research; Vol 73(4 Pt 2). 2013 Apr.
1. Morrisey EE
2. Cardoso WV
3. Lane RH
4. Rabinovitch M
5. Abman SH
6. Ai X
7. Albertine KH
8. Bland RD
9. Chapman HA
10. Checkley W
11. Epstein JA
12. Kintner CR
13. Kumar M
14. Minoo P
15. Mariani TJ
16. McDonald DM
17. Mukouyama YS
18. Prince LS
19. Reese J
20. Rossant J
21. Shi W
22. Sun X
23. Werb Z
24. Whitsett JA
25. Gail D
26. Blaisdell CJ
27. Lin QS
Molecular determinants of lung development.; Annals of the American Thoracic Society; Vol 10(2). 2013 Apr.
1. Scheible K
2. Secor-Socha S
3. Wightman T
4. Wang H
5. Mariani TJ
6. Topham DJ
7. Pryhuber G
8. Quataert S
Stability of T cell phenotype and functional assays following heparinized umbilical cord blood collection.; Cytometry. Part A : the journal of the International Society for Analytical Cytology; Vol 81(11). 2012 Nov.
1. Bhattacharya S
2. Go D
3. Krenitsky DL
4. Huyck HL
5. Solleti SK
6. Lunger VA
7. Metlay L
8. Srisuma S
9. Wert SE
10. Mariani TJ
11. Pryhuber GS
Genome-wide transcriptional profiling reveals connective tissue mast cell accumulation in bronchopulmonary dysplasia.; American journal of respiratory and critical care medicine; Vol 186(4). 2012 Aug 15.
1. Brehm JM
2. Hagiwara K
3. Tesfaigzi Y
4. Bruse S
5. Mariani TJ
6. Bhattacharya S
7. Boutaoui N
8. Ziniti JP
9. Soto-Quiros ME
10. Avila L
11. Cho MH
12. Himes B
13. Litonjua AA
14. Jacobson F
15. Bakke P
16. Gulsvik A
17. Anderson WH
18. Lomas DA
19. Forno E
20. Datta S
21. Silverman EK
22. Celedón JC
Identification of FGF7 as a novel susceptibility locus for chronic obstructive pulmonary disease.; Thorax; Vol 66(12). 2011 Dec.
1. Reddy NM
2. Potteti HR
3. Mariani TJ
4. Biswal S
5. Reddy SP
Conditional deletion of Nrf2 in airway epithelium exacerbates acute lung injury and impairs the resolution of inflammation.; American journal of respiratory cell and molecular biology; Vol 45(6). 2011 Dec.
1. Himes BE
2. Klanderman B
3. Ziniti J
4. Senter-Sylvia J
5. Soto-Quiros ME
6. Avila L
7. Celedón JC
8. Lange C
9. Mariani TJ
10. Lasky-Su J
11. Hersh CP
12. Raby BA
13. Silverman EK
14. Weiss ST
15. Demeo DL
Association of SERPINE2 with asthma.; Chest; Vol 140(3). 2011 Sep.
1. Hersh CP
2. Silverman EK
3. Gascon J
4. Bhattacharya S
5. Klanderman BJ
6. Litonjua AA
7. Lefebvre V
8. Sparrow D
9. Reilly JJ
10. Anderson WH
11. Lomas DA
12. Mariani TJ
SOX5 is a candidate gene for chronic obstructive pulmonary disease susceptibility and is necessary for lung development.; American journal of respiratory and critical care medicine; Vol 183(11). 2011 Jun 1.
1. Bhattacharya S
2. Tyagi S
3. Srisuma S
4. Demeo DL
5. Shapiro SD
6. Bueno R
7. Silverman EK
8. Reilly JJ
9. Mariani TJ
Peripheral blood gene expression profiles in COPD subjects.; Journal of clinical bioinformatics; Vol 1(1). 2011.
1. Melén E
2. Kho AT
3. Sharma S
4. Gaedigk R
5. Leeder JS
6. Mariani TJ
7. Carey VJ
8. Weiss ST
9. Tantisira KG
Expression analysis of asthma candidate genes during human and murine lung development.; Respiratory research; Vol 12. 2011.
1. Blake DJ
2. Singh A
3. Kombairaju P
4. Malhotra D
5. Mariani TJ
6. Tuder RM
7. Gabrielson E
8. Biswal S
Deletion of Keap1 in the lung attenuates acute cigarette smoke-induced oxidative stress and inflammation.; American journal of respiratory cell and molecular biology; Vol 42(5). 2010 May.
1. Srisuma S
2. Bhattacharya S
3. Simon DM
4. Solleti SK
5. Tyagi S
6. Starcher B
7. Mariani TJ
Fibroblast growth factor receptors control epithelial-mesenchymal interactions necessary for alveolar elastogenesis.; American journal of respiratory and critical care medicine; Vol 181(8). 2010 Apr 15.
1. Sharma S
2. Tantisira K
3. Carey V
4. Murphy AJ
5. Lasky-Su J
6. Celedón JC
7. Lazarus R
8. Klanderman B
9. Rogers A
10. Soto-Quirós M
11. Avila L
12. Mariani T
13. Gaedigk R
14. Leeder S
15. Torday J
16. Warburton D
17. Raby B
18. Weiss ST
A role for Wnt signaling genes in the pathogenesis of impaired lung function in asthma.; American journal of respiratory and critical care medicine; Vol 181(4). 2010 Feb 15.
1. Simon DM
2. Tsai LW
3. Ingenito EP
4. Starcher BC
5. Mariani TJ
PPARgamma deficiency results in reduced lung elastic recoil and abnormalities in airspace distribution.; Respiratory research; Vol 11. 2010.
1. Kho AT
2. Bhattacharya S
3. Tantisira KG
4. Carey VJ
5. Gaedigk R
6. Leeder JS
7. Kohane IS
8. Weiss ST
9. Mariani TJ
Transcriptomic analysis of human lung development.; American journal of respiratory and critical care medicine; Vol 181(1). 2010 Jan 1.
1. DeMeo DL
2. Mariani T
3. Bhattacharya S
4. Srisuma S
5. Lange C
6. Litonjua A
7. Bueno R
8. Pillai SG
9. Lomas DA
10. Sparrow D
11. Shapiro SD
12. Criner GJ
13. Kim HP
14. Chen Z
15. Choi AM
16. Reilly J
17. Silverman EK
Integration of genomic and genetic approaches implicates IREB2 as a COPD susceptibility gene.; American journal of human genetics; Vol 85(4). 2009 Oct.
1. Bhattacharya S
2. Mariani TJ
Array of hope: expression profiling identifies disease biomarkers and mechanism.; Biochemical Society transactions; Vol 37(Pt 4). 2009 Aug.
1. Bhattacharya S
2. Srisuma S
3. Demeo DL
4. Shapiro SD
5. Bueno R
6. Silverman EK
7. Reilly JJ
8. Mariani TJ
Molecular biomarkers for quantitative and discrete COPD phenotypes.; American journal of respiratory cell and molecular biology; Vol 40(3). 2009 Mar.
1. Kho AT
2. Bhattacharya S
3. Mecham BH
4. Hong J
5. Kohane IS
6. Mariani TJ
Expression profiles of the mouse lung identify a molecular signature of time-to-birth.; American journal of respiratory cell and molecular biology; Vol 40(1). 2009 Jan.
1. Du R
2. Tantisira K
3. Carey V
4. Bhattacharya S
5. Metje S
6. Kho AT
7. Klanderman BJ
8. Gaedigk R
9. Lazarus R
10. Mariani TJ
11. Leeder JS
12. Weiss ST
Platform dependence of inference on gene-wise and gene-set involvement in human lung development.; BMC bioinformatics; Vol 10. 2009.
1. Planagumà A
2. Kazani S
3. Marigowda G
4. Haworth O
5. Mariani TJ
6. Israel E
7. Bleecker ER
8. Curran-Everett D
9. Erzurum SC
10. Calhoun WJ
11. Castro M
12. Chung KF
13. Gaston B
14. Jarjour NN
15. Busse WW
16. Wenzel SE
17. Levy BD
Airway lipoxin A4 generation and lipoxin A4 receptor expression are decreased in severe asthma.; American journal of respiratory and critical care medicine; Vol 178(6). 2008 Sep 15.
1. Reynolds SD
2. Zemke AC
3. Giangreco A
4. Brockway BL
5. Teisanu RM
6. Drake JA
7. Mariani T
8. Di PY
9. Taketo MM
10. Stripp BR
Conditional stabilization of beta-catenin expands the pool of lung stem cells.; Stem cells (Dayton, Ohio); Vol 26(5). 2008 May.